Unwrapping the palimpsest of animal domestication through ancient nuclear genomes by Scarsbrook, L, Frantz, LAF, Larson, G

Animal domestication in the era of ancient genomics by Frantz, LAF, Bradley, DG, Larson, G, Orlando, L

863 genomes reveal the origin and domestication of chicken by Wang, M-S, Thakur, M, Peng, M-S, Frantz, LAF, Larson, G

Paleogenomics of animal domestication by Irving-Pease, EK, Ryan, H, Jamieson, A, Dimopoulos, EA, Larson, GJ, Frantz, LAF

Dog domestication and the dual dispersal of people and dogs into the Americas by Perri, AR, Feuerborn, TR, Frantz, LAF, Larson, G, Malhi, RS, Meltzer, DJ, Witt, KE

HAYSTAC: A Bayesian framework for robust and rapid species identification in high-throughput sequencing data by Dimopoulos, EA, Carmagnini, A, Velsko, IM, Warinner, C, Larson, G, Frantz, LAF, Irving-Pease, EK

Adaptation and cryptic pseudogenization in penguin Toll-like receptors by Fiddaman, S, Vinkler, M, Spiro, SG, Levy, H, Emerling, CA, Boyd, AC, Dimopoulos, EA, Vianna, JA, Cole, TL, Pan, J, Fang, M, Zhang, G, Hart, T, Frantz, LAF, Smith, A

Dogs accompanied humans during the Neolithic expansion into Europe by Ollivier, M, Tresset, A, Frantz, LAF, Bréhard, S, Bălăşescu, A, Mashkour, M, Boroneant, A, Pionnier-Capitan, M, Lebrasseur, OMM, Arbogast, R-M, Bartosiewicz, L, Debue, K, Rabinovich, R, Sablin, MV, Larson, GJ, Hänni, C, Hitte, C, Vigne, J-D

Evidence of pathogen-induced immunogenetic selection across the large geographic range of a wild seabird by Levy, H, Fiddaman, SR, Vianna, JA, Noll, D, Clucas, GV, Sidhu, JKH, Polito, MJ, Bost, CA, Phillips, RA, Crofts, S, Miller, GD, Pistorius, P, Bonnadonna, F, Le Bohec, C, Barbosa, AA, Trathan, P, Rey, AR, Frantz, LAF, Hart, T, Smith, A

A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants by Rice, ES, Alberdi, A, Alfieri, J, Athrey, G, Balacco, JR, Bardou, P, Blackmon, H, Charles, M, Cheng, HH, Fedrigo, O, Fiddaman, SR, Formenti, G, Frantz, LAF, Gilbert, MTP, Hearn, CJ, Jarvis, ED, Klopp, C, Marcos, S, Mason, AS, Velez-Irizarry, D, Xu, L, Warren, WC

Genomes of Pleistocene Siberian wolves uncover multiple extinct wolf lineages by Ramos-Madrigal, J, Sinding, M-HS, Carøe, C, Mak, SST, Niemann, J, Samaniego Castruita, JA, Fedorov, S, Kandyba, A, Germonpré, M, Bocherens, H, Feuerborn, TR, Pitulko, VV, Pavlova, EY, Nikolskiy, PA, Kasparov, AK, Ivanova, VV, Larson, G, Frantz, LAF, Willerslev, E, Meldgaard, M, Petersen, B, Sicheritz-Ponten, T, Bachmann, L, Wiig, Ø, Hansen, AJ, Gilbert, MTP, Gopalakrishnan, S

The history of Coast Salish “woolly dogs” revealed by ancient genomics and Indigenous Knowledge by Lin, AT, Hammond-Kaarremaa, L, Liu, H-L, Stantis, C, McKechnie, I, Pavel, M, Pavel, SSM, Wyss, SSÁ, Sparrow, DQ, Carr, K, Aninta, SG, Perri, A, Hartt, J, Bergström, A, Carmagnini, A, Charlton, S, Dalén, L, Feuerborn, TR, France, CAM, Gopalakrishnan, S, Grimes, V, Harris, A, Kavich, G, Sacks, BN, Sinding, M-HS, Skoglund, P, Stanton, DWG, Ostrander, EA, Larson, G, Armstrong, CG, Frantz, LAF, Hawkins, MTR, Kistler, L

Ancient chicken remains reveal the origins of virulence in Marek’s disease virus by Fiddaman, SR, Dimopoulos, EA, Lebrasseur, O, du Plessis, L, Vrancken, B, Charlton, S, Haruda, AF, Tabbada, K, Flammer, PG, Dascalu, S, Marković, N, Li, H, Franklin, G, Symmons, R, Baron, H, Daróczi-Szabó, L, Shaymuratova, DN, Askeyev, IV, Putelat, O, Sana, M, Davoudi, H, Fathi, H, Mucheshi, AS, Vahdati, AA, Zhang, L, Foster, A, Sykes, N, Baumberg, GC, Bulatović, J, Askeyev, AO, Askeyev, OV, Mashkour, M, Pybus, OG, Nair, V, Larson, G, Smith, AL, Frantz, LAF

Arctic-adapted dogs emerged at the Pleistocene–Holocene transition by Sinding, M-HS, Gopalakrishnan, S, Ramos-Madrigal, J, de Manuel, M, Pitulko, VV, Kuderna, L, Feuerborn, TR, Frantz, LAF, Vieira, FG, Niemann, J, Samaniego Castruita, JA, Carøe, C, Andersen-Ranberg, EU, Jordan, PD, Pavlova, EY, Nikolskiy, PA, Kasparov, AK, Ivanova, VV, Willerslev, E, Skoglund, P, Fredholm, M, Wennerberg, SE, Heide-Jørgensen, MP, Dietz, R, Sonne, C, Meldgaard, M, Dalén, L, Larson, G, Petersen, B, Sicheritz-Pontén, T, Bachmann, L, Wiig, Ø, Marques-Bonet, T, Hansen, AJ, Gilbert, MTP

Synchronous diversification of Sulawesi's iconic artiodactyls driven by recent geological events by Frantz, LAF, Rudzinski, A, Nugraha, AMS, Evin, A, Burton, J, Hulme-Beaman, A, Linderholm, A, Barnett, R, Vega, R, Irving-Pease, EK, Haile, J, Allen, R, Leus, K, Shephard, J, Hillyer, M, Gillemot, S, van den Hurk, J, Ogle, S, Atofanei, C, Thomas, MG, Johansson, F, Mustari, AH, Williams, J, Mohamad, K, Damayanti, CS, Wiryadi, ID, Obbles, D, Mona, S, Day, H, Yasin, M, Meker, S, McGuire, JA, Evans, BJ, von Rintelen, T, Ho, SYW, Searle, JB, Kitchener, AC, Macdonald, AA, Shaw, DJ, Hall, R, Galbusera, P, Larson, G

Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture by Meadows, JRS, Kidd, JM, Wang, G-D, Parker, HG, Schall, PZ, Bianchi, M, Christmas, MJ, Bougiouri, K, Buckley, RM, Hitte, C, Nguyen, AK, Wang, C, Jagannathan, V, Niskanen, JE, Frantz, LAF, Arumilli, M, Hundi, S, Lindblad-Toh, K, Ginja, C, Agustina, KK, André, C, Boyko, AR, Davis, BW, Drögemüller, M, Feng, X-Y, Gkagkavouzis, K, Iliopoulos, G, Harris, AC, Hytönen, MK, Kalthoff, DC, Liu, Y-H, Lymberakis, P, Poulakakis, N, Pires, AE, Racimo, F, Ramos-Almodovar, F, Savolainen, P, Venetsani, S, Tammen, I, Triantafyllidis, A, vonHoldt, B, Wayne, RK, Larson, G, Nicholas, FW, Lohi, H, Leeb, T, Zhang, Y-P, Ostrander, EA

Dire wolves were the last of an ancient New World canid lineage by Perri, AR, Mitchell, KJ, Mouton, A, Álvarez-Carretero, S, Hulme-Beaman, A, Haile, J, Jamieson, A, Meachen, J, Lin, AT, Schubert, BW, Ameen, C, Antipina, EE, Bover, P, Brace, S, Carmagnini, A, Carøe, C, Samaniego Castruita, JA, Chatters, JC, Dobney, K, dos Reis, M, Evin, A, Gaubert, P, Gopalakrishnan, S, Gower, G, Heiniger, H, Helgen, KM, Kapp, J, Kosintsev, PA, Linderholm, A, Ozga, AT, Presslee, S, Salis, AT, Saremi, NF, Shew, C, Skerry, K, Taranenko, DE, Thompson, M, Sablin, MV, Kuzmin, YV, Collins, MJ, Sinding, M-HS, Gilbert, MTP, Stone, AC, Shapiro, B, Van Valkenburgh, B, Wayne, RK, Larson, G, Cooper, A, Frantz, LAF

Fourth report on chicken genes and chromosomes 2022 by Smith, J, Alfieri, JM, Anthony, N, Arensburger, P, Athrey, GN, Balacco, J, Balic, A, Bardou, P, Barela, P, Bigot, Y, Blackmon, H, Borodin, PM, Carroll, R, Casono, MC, Charles, M, Cheng, H, Chiodi, M, Cigan, L, Coghill, LM, Crooijmans, R, Das, N, Davey, S, Davidian, A, Degalez, F, Dekkers, JM, Derks, M, Diack, AB, Djikeng, A, Drechsler, Y, Dyomin, A, Fedrigo, O, Fiddaman, SR, Formenti, G, Frantz, LAF, Fulton, JE, Gaginskaya, E, Galkina, S, Gallardo, RA, Geibel, J, Gheyas, A, Godinez, CJP, Goodell, A, Graves, JAM, Griffin, DK, Haase, B, Han, J-L, Hanotte, O, Henderson, LJ, Hou, Z-C, Howe, K, Larson, G, Smith, A

The genomic natural history of the aurochs by Rossi, C, Sinding, M-HS, Mullin, VE, Scheu, A, Erven, JAM, Verdugo, MP, Daly, KG, Ciucani, MM, Mattiangeli, V, Teasdale, MD, Diquelou, D, Manin, A, Bangsgaard, P, Collins, M, Lord, TC, Zeibert, V, Zorzin, R, Vinter, M, Timmons, Z, Kitchener, AC, Street, M, Haruda, AF, Tabbada, K, Larson, G, Frantz, LAF, Gehlen, B, Alhaique, F, Tagliacozzo, A, Fornasiero, M, Pandolfi, L, Karastoyanova, N, Sørensen, L, Kiryushin, K, Ekström, J, Mostadius, M, Grandal-d'Anglade, A, Vidal-Gorosquieta, A, Benecke, N, Kropp, C, Grushin, SP, Gilbert, MTP, Merts, I, Merts, V, Outram, AK, Rosengren, E, Kosintsev, P, Sablin, M, Tishkin, AA, Makarewicz, CA, Burger, J, Bradley, DG

Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe by Frantz, LAF, Haile, J, Lin, AT, Scheu, A, Geörg, C, Benecke, N, Alexander, M, Linderholm, A, Mullin, VE, Daly, KG, Battista, VM, Price, M, Gron, KJ, Alexandri, P, Arbogast, R-M, Arbuckle, B, Bӑlӑşescu, A, Barnett, R, Bartosiewicz, L, Baryshnikov, G, Bonsall, C, Borić, D, Boroneanţ, A, Bulatović, J, Çakirlar, C, Carretero, J-M, Chapman, J, Church, M, Crooijmans, R, De Cupere, B, Detry, C, Dimitrijevic, V, Dumitraşcu, V, Du Plessis, L, Edwards, CJ, Erek, CM, Erim-Özdoğan, A, Ervynck, A, Fulgione, D, Gligor, M, Götherström, A, Gourichon, L, Groenen, MAM, Helmer, D, Hongo, H, Horwitz, LK, Irving-Pease, EK, Lebrasseur, O, Lesur, J, Malone, C, Manaseryan, N, Marciniak, A, Martlew, H, Mashkour, M, Matthews, R, Matuzeviciute, GM, Maziar, S, Meijaard, E, McGovern, T, Megens, H-J, Miller, R, Mohaseb, AF, Orschiedt, J, Orton, D, Papathanasiou, A, Pearson, MP, Pinhasi, R, Radmanović, D, Ricaut, F-X, Richards, M, Sabin, R, Sarti, L, Schier, W, Sheikhi, S, Stephan, E, Stewart, JR, Stoddart, S, Tagliacozzo, A, Tasić, N, Trantalidou, K, Tresset, A, Valdiosera, C, Van Den Hurk, Y, Van Poucke, S, Vigne, J-D, Yanevich, A, Zeeb-Lanz, A, Triantafyllidis, A, Gilbert, MTP, Schibler, J, Rowley-Conwy, P, Zeder, M, Peters, J, Cucchi, T, Bradley, DG, Dobney, K, Burger, J, Evin, A, Girdland-Flink, L, Larson, G