Viral communities of the human gut: metagenomic analysis of composition and dynamics af Varun Aggarwala, Guanxiang Liang, Frederic D. Bushman

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Alterations in the respiratory tract microbiome in COVID-19: current observations and potential significance af Carter Merenstein, Frederic D. Bushman, Ronald G. Collman

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Selection of target sites for mobile DNA integration in the human genome. af Charles Berry, Sridhar Hannenhalli, Jeremy Leipzig, Frederic D Bushman

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The interferon response inhibits HIV particle production by induction of TRIM22. af Stephen D Barr, James R Smiley, Frederic D Bushman

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Conservation of gene cassettes among diverse viruses of the human gut. af Samuel Minot, Gary D Wu, James D Lewis, Frederic D Bushman

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A reverse transcription loop-mediated isothermal amplification assay optimized to detect multiple HIV subtypes. af Karen E Ocwieja, Scott Sherrill-Mix, Changchun Liu, Jinzhao Song, Haim Bau, Frederic D Bushman

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HTLV-1 integration into transcriptionally active genomic regions is associated with proviral expression and with HAM/TSP. af Kiran N Meekings, Jeremy Leipzig, Frederic D Bushman, Graham P Taylor, Charles R M Bangham

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Bidirectional interactions between indomethacin and the murine intestinal microbiota af Xue Liang, Kyle Bittinger, Xuanwen Li, Darrell R Abernethy, Frederic D Bushman, Garret A FitzGerald

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Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents. af Christian Hoffmann, Serena Dollive, Stephanie Grunberg, Jun Chen, Hongzhe Li, Gary D Wu, James D Lewis, Frederic D Bushman

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Succession in the gut microbiome following antibiotic and antibody therapies for Clostridium difficile. af Gregory L Peterfreund, Lee E Vandivier, Rohini Sinha, Andre J Marozsan, William C Olson, Jun Zhu, Frederic D Bushman

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Structure of a HIV-1 IN-Allosteric inhibitor complex at 2.93 Å resolution: Routes to inhibitor optimization. af Grant Eilers, Kushol Gupta, Audrey Allen, Saira Montermoso, Hemma Murali, Robert Sharp, Young Hwang, Frederic D Bushman, Gregory Van Duyne

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Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments af Erik L. Clarke, Louis J. Taylor, Chunyu Zhao, Andrew Connell, Jung-Jin Lee, Bryton Fett, Frederic D. Bushman, Kyle Bittinger

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Role of PSIP1/LEDGF/p75 in lentiviral infectivity and integration targeting. af Heather M Marshall, Keshet Ronen, Charles Berry, Manuel Llano, Heidi Sutherland, Dyana Saenz, Wendy Bickmore, Eric Poeschla, Frederic D Bushman

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Investigating hospital Mycobacterium chelonae infection using whole genome sequencing and hybrid assembly. af Christopher H Gu, Chunyu Zhao, Casey Hofstaedter, Pablo Tebas, Laurel Glaser, Robert Baldassano, Kyle Bittinger, Lisa M Mattei, Frederic D Bushman

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4444 The effect of early life antibiotics on gut microbiome and fecal bile acid concentrations in children af Alain Jesus Benitez, Jeffrey S. Gerber, Ceylan Tanes, Kyle Bittinger, Elliot S. Friedman, Hongzhe Li, Frederic D. Bushman, Gary D. Wu, Babette S. Zemel

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Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences. af Rick S Mitchell, Brett F Beitzel, Astrid R W Schroder, Paul Shinn, Huaming Chen, Charles C Berry, Joseph R Ecker, Frederic D Bushman

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Correction: LEDGF/p75-Independent HIV-1 Replication Demonstrates a Role for HRP-2 and Remains Sensitive to Inhibition by LEDGINs. af Rik Schrijvers, Jan De Rijck, Jonas Demeulemeester, Noritaka Adachi, Sofie Vets, Keshet Ronen, Frauke Christ, Frederic D Bushman, Zeger Debyser, Rik Gijsbers

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Covalent Modification of Bacteriophage T4 DNA Inhibits CRISPR-Cas9 af Alexandra L. Bryson, Young Hwang, Scott Sherrill-Mix, Gary D. Wu, James D. Lewis, Lindsay Black, Tyson A. Clark, Frederic D. Bushman

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Transfer of Viral Communities between Human Individuals during Fecal Microbiota Transplantation af Christel Chehoud, Anatoly Dryga, Young Hwang, Dorottya Nagy-Szakal, Emily B. Hollister, Ruth Ann Luna, James Versalovic, Richard Kellermayer, Frederic D. Bushman

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A role for glycolipid biosynthesis in severe fever with thrombocytopenia syndrome virus entry. af Mary Jane Drake, Benjamin Brennan, Kenneth Briley, Stephen M Bart, Eric Sherman, Agnieszka M Szemiel, Madeleine Minutillo, Frederic D Bushman, Paul Bates

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