Correction: Edge Principal Components and Squash Clustering: Using the Special Structure of Phylogenetic Placement Data for Sample Comparison. by Frederick A. Matsen IV, Steven N. Evans

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Abundance-weighted phylogenetic diversity measures distinguish microbial community states and are robust to sampling depth by Connor O. McCoy, Frederick A. Matsen IV

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Statistical inference reveals the role of length, GC content, and local sequence in V(D)J nucleotide trimming by Magdalena L Russell, Noah Simon, Philip Bradley, Frederick A Matsen IV

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Comparing T cell receptor repertoires using optimal transport. by Branden J Olson, Stefan A Schattgen, Paul G Thomas, Philip Bradley, Frederick A Matsen Iv

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Comparing T cell receptor repertoires using optimal transport by Branden J. Olson, Stefan A. Schattgen, Paul G. Thomas, Philip Bradley, Frederick A. Matsen IV

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PhyloSift: phylogenetic analysis of genomes and metagenomes by Aaron E. Darling, Guillaume Jospin, Eric Lowe, Frederick A. Matsen IV, Holly M. Bik, Jonathan A. Eisen

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Human T cell receptor occurrence patterns encode immune history, genetic background, and receptor specificity by William S DeWitt III, Anajane Smith, Gary Schoch, John A Hansen, Frederick A Matsen IV, Philip Bradley

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Deep generative models for T cell receptor protein sequences by Kristian Davidsen, Branden J Olson, William S DeWitt III, Jean Feng, Elias Harkins, Philip Bradley, Frederick A Matsen IV

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Comprehensive characterization of the antibody responses to SARS-CoV-2 Spike protein finds additional vaccine-induced epitopes beyond those for mild infection by Meghan E Garrett, Jared G Galloway, Caitlin Wolf, Jennifer K Logue, Nicholas Franko, Helen Y Chu, Frederick A Matsen IV, Julie M Overbaugh

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Reconstruction of a polyclonal ADCC antibody repertoire from an HIV-1 non-transmitting mother by Zak A. Yaffe, Shilei Ding, Kevin Sung, Vrasha Chohan, Lorie Marchitto, Laura Doepker, Duncan Ralph, Ruth Nduati, Frederick A. Matsen, IV, Andrés Finzi, Julie Overbaugh

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Combining genotypes and T cell receptor distributions to infer genetic loci determining V(D)J recombination probabilities by Magdalena L Russell, Aisha Souquette, David M Levine, Stefan A Schattgen, E Kaitlynn Allen, Guillermina Kuan, Noah Simon, Angel Balmaseda, Aubree Gordon, Paul G Thomas, Frederick A Matsen IV, Philip Bradley

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Dynamics of HIV DNA reservoir seeding in a cohort of superinfected Kenyan women. by Mark D Pankau, Daniel B Reeves, Elias Harkins, Keshet Ronen, Walter Jaoko, Kishor Mandaliya, Susan M Graham, R Scott McClelland, Frederick A Matsen Iv, Joshua T Schiffer, Julie Overbaugh, Dara A Lehman

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Detailed analysis of antibody responses to SARS-CoV-2 vaccination and infection in macaques. by Alexandra C Willcox, Kevin Sung, Meghan E Garrett, Jared G Galloway, Jesse H Erasmus, Jennifer K Logue, David W Hawman, Helen Y Chu, Kim J Hasenkrug, Deborah H Fuller, Frederick A Matsen Iv, Julie Overbaugh

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Functional development of a V3/glycan-specific broadly neutralizing antibody isolated from a case of HIV superinfection by Mackenzie M Shipley, Vidya Mangala Prasad, Laura E Doepker, Adam Dingens, Duncan K Ralph, Elias Harkins, Amrit Dhar, Dana Arenz, Vrasha Chohan, Haidyn Weight, Kishor Mandaliya, Jesse D Bloom, Frederick A Matsen IV, Kelly K Lee, Julie M Overbaugh

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Delineating the functional activity of antibodies with cross-reactivity to SARS-CoV-2, SARS-CoV-1 and related sarbecoviruses. by Felicitas Ruiz, William B Foreman, Michelle Lilly, Viren A Baharani, Delphine M Depierreux, Vrasha Chohan, Ashley L Taylor, Jamie Guenthoer, Duncan Ralph, Frederick A Matsen Iv, Helen Y Chu, Paul D Bieniasz, Marceline Côté, Tyler N Starr, Julie Overbaugh

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Development of antibody-dependent cell cytotoxicity function in HIV-1 antibodies by Laura E Doepker, Sonja Danon, Elias Harkins, Duncan K Ralph, Zak Yaffe, Meghan E Garrett, Amrit Dhar, Cassia Wagner, Megan M Stumpf, Dana Arenz, James A Williams, Walter Jaoko, Kishor Mandaliya, Kelly K Lee, Frederick A Matsen IV, Julie M Overbaugh

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Single B cell transcriptomics identifies multiple isotypes of broadly neutralizing antibodies against flaviviruses. by Jay Lubow, Lisa M Levoir, Duncan K Ralph, Laura Belmont, Maya Contreras, Catiana H Cartwright-Acar, Caroline Kikawa, Shruthi Kannan, Edgar Davidson, Veronica Duran, David E Rebellon-Sanchez, Ana M Sanz, Fernando Rosso, Benjamin J Doranz, Shirit Einav, Frederick A Matsen Iv, Leslie Goo

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AIRR Community Standardized Representations for Annotated Immune Repertoires by Jason Anthony Vander Heiden, Susanna Marquez, Nishanth Marthandan, Syed Ahmad Chan Bukhari, Christian E. Busse, Brian Corrie, Uri Hershberg, Uri Hershberg, Uri Hershberg, Steven H. Kleinstein, Steven H. Kleinstein, Frederick A. Matsen IV, Duncan K. Ralph, Aaron M. Rosenfeld, Chaim A. Schramm, The AIRR Community, Scott Christley, Uri Laserson

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Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data by Felix Breden, Eline T. Luning Prak, Bjoern Peters, Florian Rubelt, Chaim A. Schramm, Christian E. Busse, Jason A. Vander Heiden, Scott Christley, Syed Ahmad Chan Bukhari, Adrian Thorogood, Frederick A. Matsen IV, Yariv Wine, Uri Laserson, David Klatzmann, Daniel C. Douek, Marie-Paule Lefranc, Andrew M. Collins, Tania Bubela, Steven H. Kleinstein, Corey T. Watson, Lindsay G. Cowell, Jamie K. Scott, Thomas B. Kepler, Thomas B. Kepler

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Inferred Allelic Variants of Immunoglobulin Receptor Genes: A System for Their Evaluation, Documentation, and Naming by Mats Ohlin, Cathrine Scheepers, Cathrine Scheepers, Martin Corcoran, William D. Lees, Christian E. Busse, Davide Bagnara, Linnea Thörnqvist, Jean-Philippe Bürckert, Katherine J. L. Jackson, Duncan Ralph, Chaim A. Schramm, Nishanth Marthandan, Felix Breden, Jamie Scott, Frederick A. Matsen IV, Victor Greiff, Gur Yaari, Steven H. Kleinstein, Scott Christley, Jacob S. Sherkow, Sofia Kossida, Marie-Paule Lefranc, Menno C. van Zelm, Corey T. Watson, Andrew M. Collins

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