Analysis of telomerase target gene expression effects from murine models in patient cohorts by homology translation and random survival forest modeling by Frederik Otzen Bagger, Claudia Bruedigam, Steven W. Lane

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Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data by Savvas Kinalis, Finn Cilius Nielsen, Ole Winther, Frederik Otzen Bagger

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Interpretable Autoencoders Trained on Single Cell Sequencing Data Can Transfer Directly to Data from Unseen Tissues by Julie Sparholt Walbech, Savvas Kinalis, Ole Winther, Finn Cilius Nielsen, Frederik Otzen Bagger

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Benchmarking full-length transcript single cell mRNA sequencing protocols by Victoria Probst, Arman Simonyan, Felix Pacheco, Yuliu Guo, Finn Cilius Nielsen, Frederik Otzen Bagger

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Single mRNP Analysis Reveals that Small Cytoplasmic mRNP Granules Represent mRNA Singletons by Àngels Mateu-Regué, Jan Christiansen, Frederik Otzen Bagger, Ole Winther, Christian Hellriegel, Finn Cilius Nielsen

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Identification and validation of 174 COVID-19 vaccine candidate epitopes reveals low performance of common epitope prediction tools by Marek Prachar, Sune Justesen, Daniel Bisgaard Steen-Jensen, Stephan Thorgrimsen, Erik Jurgons, Ole Winther, Frederik Otzen Bagger

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Whole genome sequencing in clinical practice by Frederik Otzen Bagger, Line Borgwardt, Andreas Sand Jespersen, Anna Reimer Hansen, Birgitte Bertelsen, Miyako Kodama, Finn Cilius Nielsen

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The splicing factor RBM25 controls MYC activity in acute myeloid leukemia by Ying Ge, Mikkel Bruhn Schuster, Sachin Pundhir, Nicolas Rapin, Frederik Otzen Bagger, Nikos Sidiropoulos, Nadia Hashem, Bo Torben Porse

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Deep sequencing of human papillomavirus positive loco-regionally advanced oropharyngeal squamous cell carcinomas reveals novel mutational signature by Christian Grønhøj, David H. Jensen, Tina Agander, Katalin Kiss, Estrid Høgdall, Lena Specht, Frederik Otzen Bagger, Finn Cilius Nielsen, Christian von Buchwald

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S116: CELLULAR AND MOLECULAR MECHANISMS OF EVI1-EXPRESSING MLL-REARRANGED ACUTE MYELOID LEUKEMIA by Hugues-Etienne Châtel-Soulet, Sabine Juge, Ana Luisa Pereira, Frederik Otzen Bagger, Alexandar Tzankov, Mineo Kurokawa, Athimed El Taher, Jonathan Seguin, César Nombela Arrieta, Juerg Schwaller

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Building flexible and robust analysis frameworks for molecular subtyping of cancers by Christina Bligaard Pedersen, Benito Campos, Lasse Rene, Helene Scheel Wegener, Neeraja M. Krishnan, Binay Panda, Kristoffer Vitting‐Seerup, Maria Rossing, Frederik Otzen Bagger, Lars Rønn Olsen

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Spatial Transcriptomics of Brain Invasive Meningiomas Show Distinct TAM Profiles by Andrea Maier, Lorenzo Perino, Signe Regner Michaelsen, Tobias Overlund Stannius, Jeppe Haslund-Vinding, Nicolai Schou Bager, David Scheie, Ane Yde Schmidt, Ausrine Areškevičiūtė, Knud Elnegaard Josefsen, Frederik Otzen Bagger, Bjarne Winther Kristensen, Tiit Mathiesen

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Nuclear interacting SET domain protein 1 inactivation impairs GATA1-regulated erythroid differentiation and causes erythroleukemia by Katharina Leonards, Marwa Almosailleakh, Samantha Tauchmann, Frederik Otzen Bagger, Cécile Thirant, Sabine Juge, Thomas Bock, Hélène Méreau, Matheus F. Bezerra, Alexandar Tzankov, Robert Ivanek, Régine Losson, Antoine H. F. M. Peters, Thomas Mercher, Juerg Schwaller

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Glioblastoma cells increase expression of notch signaling and synaptic genes within infiltrated brain tissue by Dylan Scott Lykke Harwood, Vilde Pedersen, Nicolai Schou Bager, Ane Yde Schmidt, Tobias Overlund Stannius, Aušrinė Areškevičiūtė, Knud Josefsen, Dorte Schou Nørøxe, David Scheie, Hannah Rostalski, Maya Jeje Schuang Lü, Alessio Locallo, Ulrik Lassen, Frederik Otzen Bagger, Joachim Weischenfeldt, Dieter Henrik Heiland, Kristoffer Vitting-Seerup, Signe Regner Michaelsen, Bjarne Winther Kristensen

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IMPROVE: a feature model to predict neoepitope immunogenicity through broad-scale validation of T-cell recognition by Annie Borch, Ibel Carri, Birkir Reynisson, Heli M. Garcia Alvarez, Kamilla K. Munk, Alessandro Montemurro, Nikolaj Pagh Kristensen, Siri A. Tvingsholm, Jeppe Sejerø Holm, Christina Heeke, Keith Henry Moss, Ulla Kring Hansen, Anna-Lisa Schaap-Johansen, Frederik Otzen Bagger, Vinicius Araujo Barbosa de Lima, Kristoffer S. Rohrberg, Samuel A. Funt, Marco Donia, Inge Marie Svane, Ulrik Lassen, Carolina Barra, Morten Nielsen, Morten Nielsen, Sine Reker Hadrup

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