The power of operon rearrangements for predicting functional associations od Gabriel Moreno-Hagelsieb

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Quickly finding orthologs as reciprocal best hits with BLAT, LAST, and UBLAST: how much do we miss? od Natalie Ward, Gabriel Moreno-Hagelsieb

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FastANI, Mash and Dashing equally differentiate between Klebsiella species od Julie E. Hernández-Salmerón, Gabriel Moreno-Hagelsieb

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Progress in quickly finding orthologs as reciprocal best hits: comparing blast, last, diamond and MMseqs2 od Julie E. Hernández-Salmerón, Gabriel Moreno-Hagelsieb

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Fast genome-based delimitation of Enterobacterales species od Julie E. Hernández-Salmerón, Tanya Irani, Gabriel Moreno-Hagelsieb

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Fast genome-based delimitation of Enterobacterales species. od Julie E Hernández-Salmerón, Tanya Irani, Gabriel Moreno-Hagelsieb

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Environmentally-driven gene content convergence and the Bacillus phylogeny od Ismael L. Hernández-González, Gabriel Moreno-Hagelsieb, Gabriela Olmedo-Álvarez

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Comparative analysis of adenylate isopentenyl transferase genes in plant growth-promoting bacteria and plant pathogenic bacteria od Xin Wei, Gabriel Moreno-Hagelsieb, Bernard R. Glick, Andrew C. Doxey

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PathFams: statistical detection of pathogen-associated protein domains od Briallen Lobb, Benjamin Jean-Marie Tremblay, Gabriel Moreno-Hagelsieb, Andrew C. Doxey

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Thermal Plasticity and Evolutionary Constraints in <i>Bacillus</i>: Implications for Climate Change Adaptation od Enrique Hurtado-Bautista, Africa Islas-Robles, Gabriel Moreno-Hagelsieb, Gabriela Olmedo-Alvarez

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DeepReg: a deep learning hybrid model for predicting transcription factors in eukaryotic and prokaryotic genomes od Leonardo Ledesma-Dominguez, Erik Carbajal-Degante, Gabriel Moreno-Hagelsieb, Ernesto Pérez-Rueda

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The Functional Differences between the GroEL Chaperonin of <i>Escherichia coli</i> and the HtpB Chaperonin of <i>Legionella pneumophila</i> Can Be Mapped to Specific Amino Acid Res... od Karla N. Valenzuela-Valderas, Gabriel Moreno-Hagelsieb, John R. Rohde, Rafael A. Garduño

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Non-synonymous to synonymous substitutions suggest that orthologs tend to keep their functions, while paralogs are a source of functional novelty od Juan M. Escorcia-Rodríguez, Mario Esposito, Julio A. Freyre-González, Gabriel Moreno-Hagelsieb

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Expansion of the Transporter-Opsin-G protein-coupled receptor superfamily with five new protein families. od Arturo Medrano-Soto, Faezeh Ghazi, Kevin J Hendargo, Gabriel Moreno-Hagelsieb, Scott Myers, Milton H Saier

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Bioinformatic characterization of the Anoctamin Superfamily of Ca2+-activated ion channels and lipid scramblases. od Arturo Medrano-Soto, Gabriel Moreno-Hagelsieb, Daniel McLaughlin, Zachary S Ye, Kevin J Hendargo, Milton H Saier

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Comparative genomic and functional analysis of Arthrobacter sp. UMCV2 reveals the presence of luxR-related genes inducible by the biocompound N, N-dimethylhexadecilamine od Martha Patricia Chávez-Moctezuma, Ramiro Martínez-Cámara, Ramiro Martínez-Cámara, Julie Hernández-Salmerón, Gabriel Moreno-Hagelsieb, Gustavo Santoyo, Eduardo Valencia-Cantero

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The predominance of nucleotidyl activation in bacterial phosphonate biosynthesis od Kyle Rice, Kissa Batul, Jacqueline Whiteside, Jayne Kelso, Monica Papinski, Edward Schmidt, Alena Pratasouskaya, Dacheng Wang, Rebecca Sullivan, Christopher Bartlett, Joel T. Weadge, Marc W. Van der Kamp, Gabriel Moreno-Hagelsieb, Michael D. Suits, Geoff P. Horsman

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Whole-Genome Expression Profiling Defines the HrpL Regulon of Pseudomonas syringae pv. tomato DC3000, Allows de novo Reconstruction of the Hrp cis Element, and Identifies Novel Cor... od Adriana O. Ferreira, Christopher R. Myers, Jeffrey S. Gordon, Gregory B. Martin, Monica Vencato, Alan Collmer, Misty D. Wehling, James R. Alfano, Gabriel Moreno-Hagelsieb, Warren F. Lamboy, Genevieve DeClerck, David J. Schneider, Samuel W. Cartinhour

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Genetic interaction maps in Escherichia coli reveal functional crosstalk among cell envelope biogenesis pathways. od Mohan Babu, J Javier Díaz-Mejía, James Vlasblom, Alla Gagarinova, Sadhna Phanse, Chris Graham, Fouad Yousif, Huiming Ding, Xuejian Xiong, Anaies Nazarians-Armavil, Md Alamgir, Mehrab Ali, Oxana Pogoutse, Asaf Pe'er, Roland Arnold, Magali Michaut, John Parkinson, Ashkan Golshani, Chris Whitfield, Shoshana J Wodak, Gabriel Moreno-Hagelsieb, Jack F Greenblatt, Andrew Emili

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Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli. od Mohan Babu, Roland Arnold, Cedoljub Bundalovic-Torma, Alla Gagarinova, Keith S Wong, Ashwani Kumar, Geordie Stewart, Bahram Samanfar, Hiroyuki Aoki, Omar Wagih, James Vlasblom, Sadhna Phanse, Krunal Lad, Angela Yeou Hsiung Yu, Christopher Graham, Ke Jin, Eric Brown, Ashkan Golshani, Philip Kim, Gabriel Moreno-Hagelsieb, Jack Greenblatt, Walid A Houry, John Parkinson, Andrew Emili

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