MITRE: inferring features from microbiota time-series data linked to host status by Elijah Bogart, Richard Creswell, Georg K. Gerber

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MDITRE: Scalable and Interpretable Machine Learning for Predicting Host Status from Temporal Microbiome Dynamics by Venkata Suhas Maringanti, Vanni Bucci, Georg K. Gerber

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Inferring dynamic signatures of microbes in complex host ecosystems. by Georg K Gerber, Andrew B Onderdonk, Lynn Bry

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High-resolution temporal profiling of the human gut microbiome reveals consistent and cascading alterations in response to dietary glycans by Richard Creswell, Jie Tan, Jonathan W. Leff, Brandon Brooks, Michael A. Mahowald, Ruth Thieroff-Ekerdt, Georg K. Gerber

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Gut metabolites predict Clostridioides difficile recurrence by Jennifer J. Dawkins, Jessica R. Allegretti, Travis E. Gibson, Emma McClure, Mary Delaney, Lynn Bry, Georg K. Gerber

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Improving microbial fitness in the mammalian gut by in vivo temporal functional metagenomics by Stephanie J Yaung, Luxue Deng, Ning Li, Jonathan L Braff, George M Church, Lynn Bry, Harris H Wang, Georg K Gerber

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Dynamics of the microbiota in response to host infection. by Clara Belzer, Georg K Gerber, Guus Roeselers, Mary Delaney, Andrea DuBois, Qing Liu, Vera Belavusava, Vladimir Yeliseyev, Andres Houseman, Andrew Onderdonk, Colleen Cavanaugh, Lynn Bry

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Impaired glucose metabolism and altered gut microbiome despite calorie restriction of ob/ob mice by Alireza Kashani, Asker Daniel Brejnrod, Chunyu Jin, Timo Kern, Andreas Nygaard Madsen, Louise Aas Holm, Georg K. Gerber, Jens-Christian Holm, Torben Hansen, Birgitte Holst, Manimozhiyan Arumugam

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Computer-guided design of optimal microbial consortia for immune system modulation by Richard R Stein, Takeshi Tanoue, Rose L Szabady, Shakti K Bhattarai, Bernat Olle, Jason M Norman, Wataru Suda, Kenshiro Oshima, Masahira Hattori, Georg K Gerber, Chris Sander, Kenya Honda, Vanni Bucci

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Engineered Interspecies Amino Acid Cross-Feeding Increases Population Evenness in a Synthetic Bacterial Consortium by Marika Ziesack, Travis Gibson, John K. W. Oliver, Andrew M. Shumaker, Bryan B. Hsu, David T. Riglar, Tobias W. Giessen, Nicholas V. DiBenedetto, Lynn Bry, Jeffrey C. Way, Pamela A. Silver, Georg K. Gerber

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Macrophage dysfunction initiates colitis during weaning of infant mice lacking the interleukin-10 receptor by Naresh S Redhu, Vasudevan Bakthavatchalu, Evan A Conaway, Dror S Shouval, Amy Tsou, Jeremy A Goettel, Amlan Biswas, Chuanwu Wang, Michael Field, Werner Muller, Andre Bleich, Ning Li, Georg K Gerber, Lynn Bry, James G Fox, Scott B Snapper, Bruce H Horwitz

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Alterations of the human gut microbiome in multiple sclerosis by Sushrut Jangi, Roopali Gandhi, Laura M. Cox, Ning Li, Felipe von Glehn, Raymond Yan, Bonny Patel, Maria Antonietta Mazzola, Shirong Liu, Bonnie L. Glanz, Sandra Cook, Stephanie Tankou, Fiona Stuart, Kirsy Melo, Parham Nejad, Kathleen Smith, Begüm D. Topçuolu, James Holden, Pia Kivisäkk, Tanuja Chitnis, Philip L. De Jager, Francisco J. Quintana, Georg K. Gerber, Lynn Bry, Howard L. Weiner

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