Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters by Fotis A. Baltoumas, Evangelos Karatzas, David Paez-Espino, Nefeli K. Venetsianou, Eleni Aplakidou, Anastasis Oulas, Robert D. Finn, Sergey Ovchinnikov, Evangelos Pafilis, Nikos C. Kyrpides, Georgios A. Pavlopoulos, Georgios A. Pavlopoulos, Georgios A. Pavlopoulos

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NORMA: The Network Makeup Artist — A Web Tool for Network Annotation Visualization by Mikaela Koutrouli, Evangelos Karatzas, Katerina Papanikolopoulou, Georgios A. Pavlopoulos

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Corrigendum: A guide to conquer the biological network era using graph theory by Mikaela Koutrouli, Evangelos Karatzas, Evangelos Karatzas, David Paez-Espino, Georgios A. Pavlopoulos

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PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types by Haris Zafeiropoulos, Savvas Paragkamian, Stelios Ninidakis, Georgios A. Pavlopoulos, Lars Juhl Jensen, Evangelos Pafilis

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SCALA: A complete solution for multimodal analysis of single-cell Next Generation Sequencing data by Christos Tzaferis, Evangelos Karatzas, Fotis A. Baltoumas, Georgios A. Pavlopoulos, George Kollias, Dimitris Konstantopoulos

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Data and programs in support of network analysis of genes and their association with diseases by Panagiota I. Kontou, Athanasia Pavlopoulou, Niki L. Dimou, Georgios A. Pavlopoulos, Pantelis G. Bagos

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FLAME: A Web Tool for Functional and Literature Enrichment Analysis of Multiple Gene Lists by Foteini Thanati, Evangelos Karatzas, Fotis A. Baltoumas, Dimitrios J. Stravopodis, Aristides G. Eliopoulos, Georgios A. Pavlopoulos

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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks by Theodosios Theodosiou, Georgios Efstathiou, Nikolas Papanikolaou, Nikos C. Kyrpides, Pantelis G. Bagos, Ioannis Iliopoulos, Georgios A. Pavlopoulos

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Darling: A Web Application for Detecting Disease-Related Biomedical Entity Associations with Literature Mining by Evangelos Karatzas, Fotis A. Baltoumas, Ioannis Kasionis, Despina Sanoudou, Aristides G. Eliopoulos, Theodosios Theodosiou, Ioannis Iliopoulos, Georgios A. Pavlopoulos

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A survey of k-mer methods and applications in bioinformatics by Camille Moeckel, Manvita Mareboina, Maxwell A. Konnaris, Candace S.Y. Chan, Ioannis Mouratidis, Austin Montgomery, Nikol Chantzi, Georgios A. Pavlopoulos, Ilias Georgakopoulos-Soares

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Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review by Fotis A. Baltoumas, Sofia Zafeiropoulou, Evangelos Karatzas, Mikaela Koutrouli, Foteini Thanati, Kleanthi Voutsadaki, Maria Gkonta, Joana Hotova, Ioannis Kasionis, Pantelis Hatzis, Georgios A. Pavlopoulos

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Visualizing metagenomic and metatranscriptomic data: A comprehensive review by Eleni Aplakidou, Nikolaos Vergoulidis, Maria Chasapi, Nefeli K. Venetsianou, Maria Kokoli, Eleni Panagiotopoulou, Ioannis Iliopoulos, Evangelos Karatzas, Evangelos Pafilis, Ilias Georgakopoulos-Soares, Nikos C. Kyrpides, Georgios A. Pavlopoulos, Fotis A. Baltoumas

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kmerDB: A database encompassing the set of genomic and proteomic sequence information for each species by Ioannis Mouratidis, Fotis A. Baltoumas, Nikol Chantzi, Michail Patsakis, Candace S.Y. Chan, Austin Montgomery, Maxwell A. Konnaris, Eleni Aplakidou, George C. Georgakopoulos, Anshuman Das, Dionysios V. Chartoumpekis, Jasna Kovac, Georgios A. Pavlopoulos, Ilias Georgakopoulos-Soares

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