AvP: A software package for automatic phylogenetic detection of candidate horizontal gene transfers. Dahkki Georgios D Koutsovoulos, Solène Granjeon Noriot, Marc Bailly-Bechet, Etienne G J Danchin, Corinne Rancurel

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Chromosome-Wide Evolution and Sex Determination in the Three-Sexed Nematode Auanema rhodensis Dahkki Sophie Tandonnet, Georgios D. Koutsovoulos, Sally Adams, Delphine Cloarec, Manish Parihar, Mark L. Blaxter, Andre Pires-daSilva

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Improvement of eukaryotic protein predictions from soil metagenomes Dahkki Carole Belliardo, Georgios D. Koutsovoulos, Corinne Rancurel, Mathilde Clément, Justine Lipuma, Marc Bailly-Bechet, Etienne G. J. Danchin

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Movements of transposable elements contribute to the genomic plasticity and species diversification in an asexually reproducing nematode pest Dahkki Djampa K. L. Kozlowski, Rahim Hassanaly‐Goulamhoussen, Martine Da Rocha, Georgios D. Koutsovoulos, Marc Bailly‐Bechet, Etienne G. J. Danchin

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Genome sequence of the root-knot nematode Meloidogyne luci Dahkki Nik Susič, Georgios D. Koutsovoulos, Cristian Riccio, Etienne G. J. Danchin, Mark L. Blaxter, David H. Lunt, Polona Strajnar, Saša Širca, Gregor Urek, Barbara Gerič Stare

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Genome structure and content of the rice root‐knot nematode (Meloidogyne graminicola) Dahkki Ngan Thi Phan, Julie Orjuela, Etienne G. J. Danchin, Christophe Klopp, Laetitia Perfus‐Barbeoch, Djampa K. Kozlowski, Georgios D. Koutsovoulos, Céline Lopez‐Roques, Olivier Bouchez, Margot Zahm, Guillaume Besnard, Stéphane Bellafiore

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Retraction Note: Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root-knot nematode Dahkki Georgios D. Koutsovoulos, Marine Poullet, Abdelnaser Elashry, Djampa K. L. Kozlowski, Erika Sallet, Martine Da Rocha, Laetitia Perfus-Barbeoch, Cristina Martin-Jimenez, Juerg Ernst Frey, Christian H. Ahrens, Sebastian Kiewnick, Etienne G. J. Danchin

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Population genomics supports clonal reproduction and multiple independent gains and losses of parasitic abilities in the most devastating nematode pest Dahkki Georgios D. Koutsovoulos, Eder Marques, Marie‐Jeanne Arguel, Laurent Duret, Andressa C. Z. Machado, Regina M. D. G. Carneiro, Djampa K. Kozlowski, Marc Bailly‐Bechet, Philippe Castagnone‐Sereno, Erika V. S. Albuquerque, Etienne G. J. Danchin

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Targeted transcriptomics reveals signatures of large-scale independent origins and concerted regulation of effector genes in Radopholus similis Dahkki Paulo Vieira, Roxana Y. Myers, Clement Pellegrin, Catherine Wram, Cedar Hesse, Thomas R. Maier, Jonathan Shao, Georgios D. Koutsovoulos, Inga Zasada, Tracie Matsumoto, Etienne G. J. Danchin, Thomas J. Baum, Sebastian Eves-van den Akker, Lev G. Nemchinov

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Targeted transcriptomics reveals signatures of large-scale independent origins and concerted regulation of effector genes in Radopholus similis. Dahkki Paulo Vieira, Roxana Y Myers, Clement Pellegrin, Catherine Wram, Cedar Hesse, Thomas R Maier, Jonathan Shao, Georgios D Koutsovoulos, Inga Zasada, Tracie Matsumoto, Etienne G J Danchin, Thomas J Baum, Sebastian Eves-van den Akker, Lev G Nemchinov

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Unzipped genome assemblies of polyploid root-knot nematodes reveal unusual and clade-specific telomeric repeats Dahkki Ana Paula Zotta Mota, Georgios D. Koutsovoulos, Laetitia Perfus-Barbeoch, Evelin Despot-Slade, Karine Labadie, Jean-Marc Aury, Karine Robbe-Sermesant, Marc Bailly-Bechet, Caroline Belser, Arthur Péré, Corinne Rancurel, Djampa K. Kozlowski, Rahim Hassanaly-Goulamhoussen, Martine Da Rocha, Benjamin Noel, Nevenka Meštrović, Patrick Wincker, Etienne G. J. Danchin

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The genome and lifestage-specific transcriptomes of a plant-parasitic nematode and its host reveal susceptibility genes involved in trans-kingdom synthesis of vitamin B5 Dahkki Shahid Siddique, Zoran S. Radakovic, Clarissa Hiltl, Clement Pellegrin, Thomas J. Baum, Helen Beasley, Andrew F. Bent, Oliver Chitambo, Divykriti Chopra, Etienne G. J. Danchin, Eric Grenier, Samer S. Habash, M. Shamim Hasan, Johannes Helder, Tarek Hewezi, Julia Holbein, Martijn Holterman, Sławomir Janakowski, Georgios D. Koutsovoulos, Olaf P. Kranse, Jose L. Lozano-Torres, Tom R. Maier, Rick E. Masonbrink, Badou Mendy, Esther Riemer, Mirosław Sobczak, Unnati Sonawala, Mark G. Sterken, Peter Thorpe, Joris J. M. van Steenbrugge, Nageena Zahid, Florian Grundler, Sebastian Eves-van den Akker

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