Building Infrastructure for African Human Genomic Data Management by Ziyaad Parker, Suresh Maslamoney, Ayton Meintjes, Gerrit Botha, Sumir Panji, Scott Hazelhurst, Nicola Mulder

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H3AGWAS: a portable workflow for genome wide association studies by Jean-Tristan Brandenburg, Lindsay Clark, Gerrit Botha, Sumir Panji, Shakuntala Baichoo, Christopher Fields, Scott Hazelhurst

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Repeats expansions in ATXN2, NOP56, NIPA1 and ATXN1 are not associated with ALS in Africans by Melissa Nel, Thandeka Mavundla, Kayleigh Gultig, Gerrit Botha, Nicola Mulder, Michael Benatar, Joanne Wuu, Anne Cooley, Jason Myers, Evadnie Rampersaud, Gang Wu, Jeannine M. Heckmann

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Using a multiple-delivery-mode training approach to develop local capacity and infrastructure for advanced bioinformatics in Africa. by Verena Ras, Gerrit Botha, Shaun Aron, Katie Lennard, Imane Allali, Shantelle Claassen-Weitz, Kilaza Samson Mwaikono, Dane Kennedy, Jessica R Holmes, Gloria Rendon, Sumir Panji, Christopher J Fields, Nicola Mulder

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Whole-genome sequencing for an enhanced understanding of genetic variation among South Africans by Ananyo Choudhury, Michèle Ramsay, Scott Hazelhurst, Shaun Aron, Soraya Bardien, Gerrit Botha, Emile R. Chimusa, Alan Christoffels, Junaid Gamieldien, Mahjoubeh J. Sefid-Dashti, Fourie Joubert, Ayton Meintjes, Nicola Mulder, Raj Ramesar, Jasper Rees, Kathrine Scholtz, Dhriti Sengupta, Himla Soodyall, Philip Venter, Louise Warnich, Michael S. Pepper

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Organizing and running bioinformatics hackathons within Africa: The H3ABioNet cloud computing experience [version 2; peer review: 2 approved, 1 approved with reservations] by Azza E. Ahmed, Phelelani T. Mpangase, Sumir Panji, Shakuntala Baichoo, Yassine Souilmi, Faisal M. Fadlelmola, Mustafa Alghali, Shaun Aron, Hocine Bendou, Eugene De Beste, Mamana Mbiyavanga, Oussema Souiai, Long Yi, Jennie Zermeno, Don Armstrong, Brian D. O'Connor, Liudmila Sergeevna Mainzer, Michael R. Crusoe, Ayton Meintjes, Peter Van Heusden, Gerrit Botha, Fourie Joubert, C. Victor Jongeneel, Scott Hazelhurst, Nicola Mulder

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Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics by Shakuntala Baichoo, Yassine Souilmi, Sumir Panji, Gerrit Botha, Ayton Meintjes, Scott Hazelhurst, Hocine Bendou, Eugene de Beste, Phelelani T. Mpangase, Oussema Souiai, Mustafa Alghali, Long Yi, Brian D. O’Connor, Michael Crusoe, Don Armstrong, Shaun Aron, Fourie Joubert, Azza E. Ahmed, Mamana Mbiyavanga, Peter van Heusden, Lerato E. Magosi, Jennie Zermeno, Liudmila Sergeevna Mainzer, Faisal M. Fadlelmola, C. Victor Jongeneel, Nicola Mulder

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Unmapped exome reads implicate a role for Anelloviridae in childhood HIV-1 long-term non-progression by Savannah Mwesigwa, Lesedi Williams, Gaone Retshabile, Eric Katagirya, Gerald Mboowa, Busisiwe Mlotshwa, Samuel Kyobe, David P. Kateete, Eddie Mujjwiga Wampande, Misaki Wayengera, Sununguko Wata Mpoloka, Angella N. Mirembe, Ishmael Kasvosve, Koketso Morapedi, Grace P. Kisitu, Adeodata R. Kekitiinwa, Gabriel Anabwani, Moses L. Joloba, Enock Matovu, Julius Mulindwa, Harry Noyes, Gerrit Botha, Collaborative African Genomics Network (CAfGEN), TrypanoGEN Research Group, Chester W. Brown, Graeme Mardon, Mogomotsi Matshaba, Neil A. Hanchard

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The Extent and Impact of Variation in ADME Genes in Sub-Saharan African Populations by Jorge E. B. da Rocha, Jorge E. B. da Rocha, Houcemeddine Othman, Gerrit Botha, Laura Cottino, Laura Cottino, David Twesigomwe, David Twesigomwe, Samah Ahmed, Britt I. Drögemöller, Faisal M. Fadlelmola, Philip Machanick, Mamana Mbiyavanga, Sumir Panji, Galen E. B. Wright, Galen E. B. Wright, Clement Adebamowo, Clement Adebamowo, Mogomotsi Matshaba, Mogomotsi Matshaba, Michéle Ramsay, Michéle Ramsay, Gustave Simo, Martin C. Simuunza, Caroline T. Tiemessen, Sandra Baldwin, Mathias Chiano, Charles Cox, Annette S. Gross, Pamela Thomas, Francisco-Javier Gamo, Scott Hazelhurst, Scott Hazelhurst

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Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network. by C Victor Jongeneel, Ovokeraye Achinike-Oduaran, Ezekiel Adebiyi, Marion Adebiyi, Seun Adeyemi, Bola Akanle, Shaun Aron, Efejiro Ashano, Hocine Bendou, Gerrit Botha, Emile Chimusa, Ananyo Choudhury, Ravikiran Donthu, Jenny Drnevich, Oluwadamila Falola, Christopher J Fields, Scott Hazelhurst, Liesl Hendry, Itunuoluwa Isewon, Radhika S Khetani, Judit Kumuthini, Magambo Phillip Kimuda, Lerato Magosi, Liudmila Sergeevna Mainzer, Suresh Maslamoney, Mamana Mbiyavanga, Ayton Meintjes, Danny Mugutso, Phelelani Mpangase, Richard Munthali, Victoria Nembaware, Andrew Ndhlovu, Trust Odia, Adaobi Okafor, Olaleye Oladipo, Sumir Panji, Venesa Pillay, Gloria Rendon, Dhriti Sengupta, Nicola Mulder

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