High-order chromatin architecture determines the landscape of chromosomal alterations in cancer by Fudenberg, Geoffrey, Getz, Gad, Meyerson, Matthew L., Mirny, Leonid A.

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Comprehensive molecular characterization of clear cell renal cell carcinoma by Getz, Gad Asher, Voet, Douglas, Lin, Pei, Chin, Lynda, Lander, Eric Steven

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Somatic retrotransposition in human cancer revealed by whole-genome and exome sequencing by Helman, Elena, Lawrence, Michael S., Stewart, Chip, Sougnez, Carrie, Getz, Gad, Meyerson, Matthew L.

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GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers by Mermel, Craig H., Schumacher, Steven E., Hill, Barbara, Meyerson, Matthew L., Beroukhim, Rameen, Getz, Gad

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Integrative Genomics Viewer by Robinson, James T., Thorvaldsdóttir, Helga, Winckler, Wendy, Guttman, Mitchell, Getz, Gad, Mesirov, Jill P., Lander, Eric Steven

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Comprehensive assessment of cancer missense mutation clustering in protein structures by Kamburov, Atanas, Polak, Paz, Lage, Kasper, Lawrence, Michael, Leshchiner, Ignaty, Golub, Todd, Lander, Eric Steven, Getz, Gad Asher

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Comprehensive molecular characterization of gastric adenocarcinoma by Getz, Gad Asher, Sougnez, Carrie L, Jung, Joonil, Lander, Eric Steven, Lin, Pei, Voet, Douglas, Meyerson, Matthew L.

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Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability by Drier, Yotam, Lawrence, Michael S., Carter, Scott L., Stewart, Chip, Gabriel, Stacey B., Meyerson, Matthew L., Beroukhim, Rameen, Getz, Gad, Lander, Eric Steven

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Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples by Cibulskis, Kristian, Sivachenko, Andrey, Jaffe, David B., Sougnez, Carrie, Gabriel, Stacey B., Meyerson, Matthew L., Getz, Gad, Lawrence, Michael S., Carter, Scott L., Lander, Eric Steven

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Discovery and saturation analysis of cancer genes across 21 tumour types by Lawrence, Michael S., Stojanov, Petar, Mermel, Craig H., Robinson, James T., Garraway, Levi A., Golub, Todd R., Meyerson, Matthew L., Gabriel, Stacey B., Getz, Gad, Lander, Eric Steven

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Discovery and characterization of artifactual mutations in deep coverage targeted capture sequencing data due to oxidative DNA damage during sample preparation by Costello, Maura, Pugh, Trevor J., Fennell, Timothy, Stewart, Chip, Lichtenstein, Lee, Meldrim, James C., Fostel, Jennifer L., Friedrich, Dennis C., Perrin, Danielle, Dionne, Danielle, Kim, Sharon, Gabriel, Stacey B., Fisher, Sheila, Getz, Gad, Lander, Eric Steven

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RNF43 is frequently mutated in colorectal and endometrial cancers by Giannakis, Marios, Hodis, Eran, Jasmine Mu, Xinmeng, Yamauchi, Mai, Rosenbluh, Joseph, Cibulskis, Kristian, Saksena, Gordon, Lawrence, Michael S, Qian, Zhi Rong, Nishihara, Reiko, Van Allen, Eliezer M, Hahn, William C, Gabriel, Stacey B, Getz, Gad, Ogino, Shuji, Fuchs, Charles S, Garraway, Levi A, Lander, Eric Steven

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Whole Exome Sequencing Identifies TSC1/TSC2 Biallelic Loss as the Primary and Sufficient Driver Event for Renal Angiomyolipoma Development by Giannikou, Krinio, Malinowska, Izabela A., Pugh, Trevor J., Yan, Rachel, Tseng, Yuen-Yi, Kim, Jaegil, Tyburczy, Magdalena E., Chekaluk, Yvonne, Liu, Yang, Alesi, Nicola, Finlay, Geraldine A., Wu, Chin-Lee, Signoretti, Sabina, Henske, Elizabeth P., Kwiatkowski, David J., Oh, Coyin, Meyerson, Matthew L, Getz, Gad Asher, Boehm, Jesse S

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Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling by Lareau, Caleb A, Ludwig, Leif S, Muus, Christoph, Gohil, Satyen H, Zhao, Tongtong, Chiang, Zachary, Pelka, Karin, Verboon, Jeffrey M, Luo, Wendy, Christian, Elena, Rosebrock, Daniel, Getz, Gad, Boland, Genevieve M, Chen, Fei, Buenrostro, Jason D, Hacohen, Nir, Wu, Catherine J, Aryee, Martin J, Regev, Aviv, Sankaran, Vijay G

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Using an atlas of gene regulation across 44 human tissues to inform complex disease- and trait-associated variation by Gamazon, Eric R., Segrè, Ayellet V., van de Bunt, Martijn, Wen, Xiaoquan, Xi, Hualin S., Hormozdiari, Farhad, Ongen, Halit, Konkashbaev, Anuar, Derks, Eske M., Aguet, François, Quan, Jie, GTEx Consortium, Nicolae, Dan L., Eskin, Eleazar, Kamvysselis, Manolis, Getz, Gad, McCarthy, Mark I., Dermitzakis, Emmanouil T., Cox, Nancy J., Ardlie, Kristin G.

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Response and Acquired Resistance to Everolimus in Anaplastic Thyroid Cancer by Van Allen, Eliezer M., Amin-Mansour, Ali, Taylor-Weiner, Amaro, Rosenberg, Mara, Barletta, Justine A., Guo, Yanan, Swanson, Scott J., Ruan, Daniel T., Hanna, Glenn J., Haddad, Robert I., Kwiatkowski, David J., Jänne, Pasi A., Lorch, Jochen H., Wagle, Nikhil, Grabiner, Brian, Gray, Nathanael S, Getz, Gad Asher, Carter, Scott, Sabatini, David, Garraway, Levi A.

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Genetic and Clonal Dissection of Murine Small Cell Lung Carcinoma Progression by Genome Sequencing by Taylor-Weiner, Amaro, Stewart, Chip, Carter, Scott L., Cibulskis, Kristian, McKenna, Aaron, Dooley, Alison, Sougnez, Carrie, Park, Jennifer, Farago, Anna F., Dayton, Talya, Shefler, Erica, Gabriel, Stacey, Getz, Gad, McFadden, David Glenn, Papagiannakopoulos, Thales, Bhutkar, Arjun, Vernon, Amanda, Malstrom, Scott E., Heimann, Megan Kristianne, Parker, Jennifer E., Chen, Frances K., Jacks, Tyler E.

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Paired exome analysis of Barrett's esophagus and adenocarcinoma by Stachler, Matthew D, Taylor-Weiner, Amaro, Peng, Shouyong, McKenna, Aaron, Agoston, Agoston T, Odze, Robert D, Davison, Jon M, Nason, Katie S, Loda, Massimo, Leshchiner, Ignaty, Stewart, Chip, Stojanov, Petar, Seepo, Sara, Lawrence, Michael S, Ferrer-Torres, Daysha, Lin, Jules, Chang, Andrew C, Gabriel, Stacey B, Beer, David G, Getz, Gad, Carter, Scott L, Bass, Adam J, Lander, Eric Steven

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Paired exome analysis of Barrett's esophagus and adenocarcinoma by Stachler, Matthew D, Taylor-Weiner, Amaro, Peng, Shouyong, McKenna, Aaron, Agoston, Agoston T, Odze, Robert D, Davison, Jon M, Nason, Katie S, Loda, Massimo, Leshchiner, Ignaty, Stewart, Chip, Stojanov, Petar, Seepo, Sara, Lawrence, Michael S, Ferrer-Torres, Daysha, Lin, Jules, Chang, Andrew C, Gabriel, Stacey B, Beer, David G, Getz, Gad, Carter, Scott L, Bass, Adam J, Lander, Eric Steven

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Integrated genomic profiling of endometrial carcinoma associates aggressive tumors with indicators of PI3 kinase activation by Salvesen, H. B., Carter, Scott L., Mannelqvist, M., Dutt, Amit, Getz, Gad, Stefansson, I. M., Raeder, M. B., Sos, M. L., Engelsen, I. B., Trovik, J., Wik, E., Greulich, Heidi, Bo, T. H., Jonassen, I., Thomas, R. K., Zander, T., Garraway, Levi A., Oyan, A. M., Sellers, W. R., Kalland, K. H., Meyerson, Matthew L., Akslen, L. A., Beroukhim, Rameen

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