Identification and Genetic Characterization of a Novel Respirovirus in Alpine Chamois (<i>Rupicapra rupicapra rupicapra</i>) by Camilla Luzzago, Erika Ebranati, Antonio Lavazza, Martina Besozzi, Gianguglielmo Zehender, Paolo Lanfranchi, Stefania Lauzi

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Early-Transmitted Variants and Their Evolution in a HIV-1 Positive Couple: NGS and Phylogenetic Analyses by Alessia Lai, Vania Giacomet, Annalisa Bergna, Gian Vincenzo Zuccotti, Gianguglielmo Zehender, Mario Clerici, Daria Trabattoni, Claudio Fenizia

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Evidence of SARS-CoV-2 Antibodies and RNA on Autopsy Cases in the Pre-Pandemic Period in Milan (Italy) by Alessia Lai, Stefano Tambuzzi, Annalisa Bergna, Alessio Battistini, Carla Della Ventura, Massimo Galli, Riccardo Zoja, Gianguglielmo Zehender, Cristina Cattaneo

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High-resolution diffusion pattern of human infections by Salmonella enterica serovar Napoli in Northern Italy explained through phylogeography. by Maria Gori, Erika Ebranati, Erika Scaltriti, Pol Huedo, Giulia Ciceri, Elisabetta Tanzi, Mirella Pontello, Gianguglielmo Zehender, Stefano Pongolini, Luca Bolzoni

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Phylogenetic analysis of human immunodeficiency virus type 2 group B by Eleonora Cella, Alessandra Lo Presti, Marta Giovanetti, Carla Veo, Alessia Lai, Giordano Dicuonzo, Silvia Angeletti, Marco Ciotti, Gianguglielmo Zehender, Massimo Ciccozzi

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MALDI-TOF MS Identification and Clustering Applied to Enterobacter Species in Nosocomial Setting by Lucia De Florio, Elisabetta Riva, Annalisa Giona, Etleva Dedej, Marta Fogolari, Eleonora Cella, Silvia Spoto, Alessia Lai, Gianguglielmo Zehender, Massimo Ciccozzi, Silvia Angeletti

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From Clinical Specimen to Whole Genome Sequencing of A(H3N2) Influenza Viruses: A Fast and Reliable High-Throughput Protocol by Cristina Galli, Erika Ebranati, Laura Pellegrinelli, Martina Airoldi, Carla Veo, Carla Della Ventura, Arlinda Seiti, Sandro Binda, Massimo Galli, Gianguglielmo Zehender, Elena Pariani

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Spatial and Temporal Phylogeny of Border Disease Virus in Pyrenean Chamois (Rupicapra p. pyrenaica). by Camilla Luzzago, Erika Ebranati, Oscar Cabezón, Laura Fernández-Sirera, Santiago Lavín, Rosa Rosell, Carla Veo, Luca Rossi, Serena Cavallero, Paolo Lanfranchi, Ignasi Marco, Gianguglielmo Zehender

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Bayesian phylogeography of Crimean-Congo hemorrhagic fever virus in Europe. by Gianguglielmo Zehender, Erika Ebranati, Renata Shkjezi, Anna Papa, Camilla Luzzago, Elena Gabanelli, Alessandra Lo Presti, Alessia Lai, Giovanni Rezza, Massimo Galli, Silvia Bino, Massimo Ciccozzi

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Epidemiology and molecular analyses of respiratory syncytial virus in the 2021–2022 season in northern Italy by Alessia Lai, Annalisa Bergna, Valentina Fabiano, Valentina Fabiano, Carla della Ventura, Giulia Fumagalli, Alessandra Mari, Martina Loiodice, Gian Vincenzo Zuccotti, Gian Vincenzo Zuccotti, Gianguglielmo Zehender

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Serum antibody fingerprinting of SARS-CoV-2 variants in infected and vaccinated subjects by label-free microarray biosensor by Thomas Carzaniga, Luca Casiraghi, Giovanni Nava, Giuliano Zanchetta, Tommaso Inzani, Marcella Chiari, Valentina Bollati, Sara Epis, Claudio Bandi, Alessia Lai, Gianguglielmo Zehender, Tommaso Bellini, Marco Buscaglia

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Reconstruction of the evolutionary dynamics of the A(H1N1)pdm09 influenza virus in Italy during the pandemic and post-pandemic phases. by Gianguglielmo Zehender, Elena Pariani, Antonio Piralla, Alessia Lai, Elena Gabanelli, Alberto Ranghiero, Erika Ebranati, Antonella Amendola, Giulia Campanini, Francesca Rovida, Massimo Ciccozzi, Massimo Galli, Fausto Baldanti, Alessandro Remo Zanetti

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Human-to-Cat SARS-CoV-2 Transmission: Case Report and Full-Genome Sequencing from an Infected Pet and Its Owner in Northern Italy by Gabriele Pagani, Alessia Lai, Annalisa Bergna, Alberto Rizzo, Angelica Stranieri, Alessia Giordano, Saverio Paltrinieri, Davide Lelli, Nicola Decaro, Stefano Rusconi, Maria Rita Gismondo, Spinello Antinori, Stefania Lauzi, Massimo Galli, Gianguglielmo Zehender

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Time and Mode of Epidemic HCV-2 Subtypes Spreading in Europe: Phylodynamics in Italy and Albania by Erika Ebranati, Alessandro Mancon, Martina Airoldi, Silvia Renica, Renata Shkjezi, Pranvera Dragusha, Carla Della Ventura, Anna Rita Ciccaglione, Massimo Ciccozzi, Silvia Bino, Elisabetta Tanzi, Valeria Micheli, Elisabetta Riva, Massimo Galli, Gianguglielmo Zehender

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HIV-1 A1 Subtype Epidemic in Italy Originated from Africa and Eastern Europe and Shows a High Frequency of Transmission Chains Involving Intravenous Drug Users. by Alessia Lai, Giorgio Bozzi, Marco Franzetti, Francesca Binda, Francesco R Simonetti, Andrea De Luca, Valeria Micheli, Paola Meraviglia, Patrizia Bagnarelli, Antonio Di Biagio, Laura Monno, Francesco Saladini, Maurizio Zazzi, Gianguglielmo Zehender, Massimo Ciccozzi, Claudia Balotta

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HIV-1 subtype F1 epidemiological networks among Italian heterosexual males are associated with introduction events from South America. by Alessia Lai, Francesco R Simonetti, Gianguglielmo Zehender, Andrea De Luca, Valeria Micheli, Paola Meraviglia, Paola Corsi, Patrizia Bagnarelli, Paolo Almi, Alessia Zoncada, Stefania Paolucci, Angela Gonnelli, Grazia Colao, Danilo Tacconi, Marco Franzetti, Massimo Ciccozzi, Maurizio Zazzi, Claudia Balotta

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Molecular Tracing of SARS-CoV-2 in Italy in the First Three Months of the Epidemic by Alessia Lai, Annalisa Bergna, Sara Caucci, Nicola Clementi, Ilaria Vicenti, Filippo Dragoni, Anna Maria Cattelan, Stefano Menzo, Angelo Pan, Annapaola Callegaro, Adriano Tagliabracci, Arnaldo Caruso, Francesca Caccuri, Silvia Ronchiadin, Claudia Balotta, Maurizio Zazzi, Emanuela Vaccher, Massimo Clementi, Massimo Galli, Gianguglielmo Zehender

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Reconstructing the recent West Nile virus lineage 2 epidemic in Europe and Italy using discrete and continuous phylogeography. by Gianguglielmo Zehender, Carla Veo, Erika Ebranati, Valentina Carta, Francesca Rovida, Elena Percivalle, Ana Moreno, Davide Lelli, Mattia Calzolari, Antonio Lavazza, Chiara Chiapponi, Laura Baioni, Gioia Capelli, Silvia Ravagnan, Graziana Da Rold, Enrico Lavezzo, Giorgio Palù, Fausto Baldanti, Luisa Barzon, Massimo Galli

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Circulating SARS-CoV-2 variants in Italy, October 2020–March 2021 by Alessia Lai, Annalisa Bergna, Stefano Menzo, Gianguglielmo Zehender, Sara Caucci, Valeria Ghisetti, Francesca Rizzo, Fabrizio Maggi, Francesco Cerutti, Giorgio Giurato, Alessandro Weisz, Chiara Turchi, Bianca Bruzzone, Francesca Ceccherini Silberstein, Nicola Clementi, Annapaola Callegaro, Fabio Sagradi, Daniela Francisci, Emmanuele Venanzi Rullo, Ilaria Vicenti, Massimo Clementi, Massimo Galli, collaborative group SCIRE SARS-CoV-2 Italian Research Enterprise

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Phylogeography and genomic epidemiology of SARS-CoV-2 in Italy and Europe with newly characterized Italian genomes between February-June 2020 by Alessia Lai, Annalisa Bergna, Stefano Toppo, Marina Morganti, Stefano Menzo, Valeria Ghisetti, Bianca Bruzzone, Mauro Codeluppi, Vito Fiore, Emmanuele Venanzi Rullo, Guido Antonelli, Loredana Sarmati, Gaetano Brindicci, Annapaola Callegaro, Caterina Sagnelli, Daniela Francisci, Ilaria Vicenti, Arianna Miola, Giovanni Tonon, Daniela Cirillo, Ilaria Menozzi, Sara Caucci, Francesco Cerutti, Andrea Orsi, Roberta Schiavo, Sergio Babudieri, Giuseppe Nunnari, Claudio M. Mastroianni, Massimo Andreoni, Laura Monno, Davide Guarneri, Nicola Coppola, Andrea Crisanti, Massimo Galli, Gianguglielmo Zehender, SCIRE-SARS-CoV-2 Italian Research Enterprise-Collaborative Group

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