Characterization of the salivary microbiome in patients with pancreatic cancer by Torres, Pedro J., Fletcher, Erin M., Gibbons, Sean M., Bouvet, Michael, Doran, Kelly S., Kelley, Scott T., Gibbons, Sean

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Correcting for batch effects in case-control microbiome studies by Gibbons, Sean Michael, Duvallet, Claire, Alm, Eric J

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Identifying predictive features of Clostridium difficile infection recurrence before, during, and after primary antibiotic treatment by Bhanvadia, Amit, Zhu, Roger, Amarnani, Abhimanyu, Gibbons, Sean M., Martello, Laura A., Pakpour, Sepideh, Gibbons, Sean Michael, Gurry, Thomas Jerome, Alm, Eric J

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Two dynamic regimes in the human gut microbiome by Gibbons, Sean Michael, Kearney, Sean M, Smillie, Chris S, Alm, Eric J

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Orthogonal Dietary Niche Enables Reversible Engraftment of a Gut Bacterial Commensal by Kearney, Sean M, Gibbons, Sean Michael, Erdman, Susan E, Alm, Eric J

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Shrub encroachment is associated with changes in soil bacterial community composition in a temperate grassland ecosystem by Xiang, Xingjia, Gibbons, Sean M, Li, He, Shen, Haihua, Fang, Jingyun, Chu, Haiyan

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Meta-analysis of gut microbiome studies identifies disease-specific and shared responses by Irizarry, Rafael A., Duvallet, Claire, Gibbons, Sean Michael, Gurry, Thomas Jerome, Alm, Eric J

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Rapid response of arbuscular mycorrhizal fungal communities to short-term fertilization in an alpine grassland on the Qinghai-Tibet Plateau by Xiang, Xingjia, He, Jin-Sheng, Wang, Chao, He, Dan, Li, Qian, Ni, Yingying, Chu, Haiyan, Gibbons, Sean Michael

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Adaptive Evolution within Gut Microbiomes of Healthy People by Zhao, Shijie, Lieberman, Tami, Poyet, Mathilde, Kauffman, Kathryn, Gibbons, Sean M., Groussin, Mathieu, Xavier, Ramnik J., Alm, Eric J

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Endospores and other lysis-resistant bacteria comprise a widely shared core community within the human microbiota by Bullock, Kevin, Allegretti, Jessica R., Clish, Clary B., Kearney, Sean M, Gibbons, Sean Michael, Poyet, Mathilde, Gurry, Thomas Jerome, Alm, Eric J

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Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort by Ananthakrishnan, Ashwin, Kassam, Zain, Gurry, Thomas Jerome, Gibbons, Sean Michael, Nguyen, Le Thanh Tu, Jiang, Xiaofang, Duvallet, Claire, Alm, Eric J, Kearney, Sean Michael

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Elevated rates of horizontal gene transfer in the industrialized human microbiome by Groussin, Mathieu, Poyet, Mathilde, Sistiaga Guiterrez, Maria Ainara, Kearney, Sean Michael, Moniz, Katya H, Noel, Mary, Hooker, Jeff, Gibbons, Sean Michael, Segurel, Laure, Froment, Alain, Mohamed, Rihlat Said, Fezeu, Alain, Juimo, Vanessa A., Lafosse, Sophie, Tabe, Francis E., Girard, Catherine, Iqaluk, Deborah, Nguyen, Le Thanh Tu, Shapiro, B. Jesse, Lehtimäki, Jenni, Ruokolainen, Lasse, Kettunen, Pinja P., Vatanen, Tommi, Sigwazi, Shani, Mabulla, Audax, Domínguez-Rodrigo, Manuel, Nartey, Yvonne A., Agyei-Nkansah, Adwoa, Duah, Amoako, Awuku, Yaw A., Valles, Kenneth A., Asibey, Shadrack O., Afihene, Mary Y., Roberts, Lewis R., Plymoth, Amelie, Onyekwere, Charles A., Summons, Roger E, Xavier, Ramnik Joseph, Alm, Eric J

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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 by Bolyen, Evan, Rideout, Jai Ram, Dillon, Matthew R., Bokulich, Nicholas A., Abnet, Christian C., Al-Ghalith, Gabriel A., Alexander, Harriet, Alm, Eric J, Arumugam, Manimozhiyan, Asnicar, Francesco, Bai, Yang, Bisanz, Jordan E., Bittinger, Kyle, Brejnrod, Asker, Brislawn, Colin J., Brown, C. Titus, Callahan, Benjamin J., Caraballo-Rodríguez, Andrés Mauricio, Chase, John, Cope, Emily K., Da Silva, Ricardo, Diener, Christian, Dorrestein, Pieter C., Douglas, Gavin M., Durall, Daniel M., Duvallet, Claire, Edwardson, Christian F., Ernst, Madeleine, Estaki, Mehrbod, Fouquier, Jennifer, Gauglitz, Julia M., Gibbons, Sean M., Gibson, Deanna L., Gonzalez, Antonio, Gorlick, Kestrel, Guo, Jiarong, Hillmann, Benjamin, Holmes, Susan, Holste, Hannes, Huttenhower, Curtis, Huttley, Gavin A., Janssen, Stefan, Jarmusch, Alan K., Jiang, Lingjing, Kaehler, Benjamin D., Kang, Kyo Bin, Keefe, Christopher R., Keim, Paul, Kelley, Scott T., Knights, Dan, Koester, Irina, Kosciolek, Tomasz, Kreps, Jorden, Langille, Morgan G. I., Lee, Joslynn, Ley, Ruth, Liu, Yong-Xin, Loftfield, Erikka, Lozupone, Catherine, Maher, Massoud, Marotz, Clarisse, Martin, Bryan D., McDonald, Daniel, McIver, Lauren J., Melnik, Alexey V., Metcalf, Jessica L., Morgan, Sydney C., Morton, Jamie T., Naimey, Ahmad Turan, Navas-Molina, Jose A., Nothias, Louis Felix, Orchanian, Stephanie B., Pearson, Talima, Peoples, Samuel L., Petras, Daniel, Preuss, Mary Lai, Pruesse, Elmar, Rasmussen, Lasse Buur, Rivers, Adam, Robeson, Michael S., Rosenthal, Patrick, Segata, Nicola, Shaffer, Michael, Shiffer, Arron, Sinha, Rashmi, Song, Se Jin, Spear, John R., Swafford, Austin D., Thompson, Luke R., Torres, Pedro J., Trinh, Pauline, Tripathi, Anupriya, Turnbaugh, Peter J., Ul-Hasan, Sabah, van der Hooft, Justin J. J., Vargas, Fernando, Vázquez-Baeza, Yoshiki, Vogtmann, Emily, von Hippel, Max, Walters, William, Wan, Yunhu, Wang, Mingxun, Warren, Jonathan, Weber, Kyle C., Williamson, Charles H. D., Willis, Amy D., Xu, Zhenjiang Zech, Zaneveld, Jesse R., Zhang, Yilong, Zhu, Qiyun, Knight, Rob, Caporaso, J. Gregory

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