Fast and accurate Ab Initio Protein structure prediction using deep learning potentials. by Robin Pearce, Yang Li, Gilbert S Omenn, Yang Zhang

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Identification of 13 Guanidinobenzoyl- or Aminidinobenzoyl-Containing Drugs to Potentially Inhibit TMPRSS2 for COVID-19 Treatment by Xiaoqiang Huang, Robin Pearce, Gilbert S. Omenn, Yang Zhang

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Systematically differentiating functions for alternatively spliced isoforms through integrating RNA-seq data. by Ridvan Eksi, Hong-Dong Li, Rajasree Menon, Yuchen Wen, Gilbert S Omenn, Matthias Kretzler, Yuanfang Guan

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Ontology-based combinatorial comparative analysis of adverse events associated with killed and live influenza vaccines. by Sirarat Sarntivijai, Zuoshuang Xiang, Kerby A Shedden, Howard Markel, Gilbert S Omenn, Brian D Athey, Yongqun He

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TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for Gene Function Prediction by Yi-Heng Zhu, Chengxin Zhang, Yan Liu, Gilbert S. Omenn, Peter L. Freddolino, Dong-Jun Yu, Yang Zhang

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Cellular, transcriptomic and isoform heterogeneity of breast cancer cell line revealed by full-length single-cell RNA sequencing by Shaocheng Wu, Hongjiu Zhang, Shamileh Fouladdel, Hongyang Li, Evan Keller, Max S. Wicha, Gilbert S. Omenn, Ebrahim Azizi, Yuanfang Guan

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"Topological significance" analysis of gene expression and proteomic profiles from prostate cancer cells reveals key mechanisms of androgen response. by Adaikkalam Vellaichamy, Zoltán Dezso, Lellean JeBailey, Arul M Chinnaiyan, Arun Sreekumar, Alexey I Nesvizhskii, Gilbert S Omenn, Andrej Bugrim

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Proteomic interrogation of androgen action in prostate cancer cells reveals roles of aminoacyl tRNA synthetases. by Adaikkalam Vellaichamy, Arun Sreekumar, John R Strahler, Theckelnaycke Rajendiran, Jindan Yu, Sooryanarayana Varambally, Yong Li, Gilbert S Omenn, Arul M Chinnaiyan, Alexey I Nesvizhskii

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Novel bioinformatics method for identification of genome-wide non-canonical spliced regions using RNA-Seq data. by Yongsheng Bai, Justin Hassler, Ahdad Ziyar, Philip Li, Zachary Wright, Rajasree Menon, Gilbert S Omenn, James D Cavalcoli, Randal J Kaufman, Maureen A Sartor

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Integrated expression profiling and ChIP-seq analyses of the growth inhibition response program of the androgen receptor. by Biaoyang Lin, Jun Wang, Xu Hong, Xiaowei Yan, Daehee Hwang, Ji-Hoon Cho, Danielle Yi, Angelita G Utleg, Xuefeng Fang, Dustin E Schones, Keji Zhao, Gilbert S Omenn, Leroy Hood

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Functional organization of the maternal and paternal human 4D Nucleome by Stephen Lindsly, Wenlong Jia, Haiming Chen, Sijia Liu, Scott Ronquist, Can Chen, Xingzhao Wen, Cooper Stansbury, Gabrielle A. Dotson, Charles Ryan, Alnawaz Rehemtulla, Gilbert S. Omenn, Max Wicha, Shuai Cheng Li, Lindsey Muir, Indika Rajapakse

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A retrospective cohort analysis leveraging augmented intelligence to characterize long COVID in the electronic health record: A precision medicine framework. by Zachary H Strasser, Arianna Dagliati, Zahra Shakeri Hossein Abad, Jeffrey G Klann, Kavishwar B Wagholikar, Rebecca Mesa, Shyam Visweswaran, Michele Morris, Yuan Luo, Darren W Henderson, Malarkodi Jebathilagam Samayamuthu, Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Gilbert S Omenn, Zongqi Xia, John H Holmes, Hossein Estiri, Shawn N Murphy

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Distinguishing Admissions Specifically for COVID-19 From Incidental SARS-CoV-2 Admissions: National Retrospective Electronic Health Record Study by Jeffrey G Klann, Zachary H Strasser, Meghan R Hutch, Chris J Kennedy, Jayson S Marwaha, Michele Morris, Malarkodi Jebathilagam Samayamuthu, Ashley C Pfaff, Hossein Estiri, Andrew M South, Griffin M Weber, William Yuan, Paul Avillach, Kavishwar B Wagholikar, Yuan Luo, Gilbert S Omenn, Shyam Visweswaran, John H Holmes, Zongqi Xia, Gabriel A Brat, Shawn N Murphy

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A new framework for host-pathogen interaction research by Hong Yu, Hong Yu, Li Li, Anthony Huffman, John Beverley, John Beverley, Junguk Hur, Eric Merrell, Hsin-hui Huang, Hsin-hui Huang, Yang Wang, Yang Wang, Yang Wang, Yingtong Liu, Edison Ong, Liang Cheng, Tao Zeng, Jingsong Zhang, Pengpai Li, Zhiping Liu, Zhigang Wang, Xiangyan Zhang, Xiangyan Zhang, Xianwei Ye, Xianwei Ye, Samuel K. Handelman, Jonathan Sexton, Kathryn Eaton, Gerry Higgins, Gilbert S. Omenn, Brian Athey, Barry Smith, Luonan Chen, Yongqun He

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Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework by Gustavo Glusman, Peter W. Rose, Andreas Prlić, Jennifer Dougherty, José M. Duarte, Andrew S. Hoffman, Geoffrey J. Barton, Emøke Bendixen, Timothy Bergquist, Christian Bock, Elizabeth Brunk, Marija Buljan, Stephen K. Burley, Binghuang Cai, Hannah Carter, JianJiong Gao, Adam Godzik, Michael Heuer, Michael Hicks, Thomas Hrabe, Rachel Karchin, Julia Koehler Leman, Lydie Lane, David L. Masica, Sean D. Mooney, John Moult, Gilbert S. Omenn, Frances Pearl, Vikas Pejaver, Sheila M. Reynolds, Ariel Rokem, Torsten Schwede, Sicheng Song, Hagen Tilgner, Yana Valasatava, Yang Zhang, Eric W. Deutsch

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A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology by Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale, John Beverley, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Yang Wang, Philip Huang, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng, Anna Maria Masci, Liwei Wang, Hongfang Liu, Fatima Zohra Smaili, Robert Hoehndorf, Zoë May Pendlington, Paola Roncaglia, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur, Gilbert S. Omenn, Brian Athey, Barry Smith

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A high-stringency blueprint of the human proteome by Subash Adhikari, Edouard C. Nice, Eric W. Deutsch, Lydie Lane, Gilbert S. Omenn, Stephen R. Pennington, Young-Ki Paik, Christopher M. Overall, Fernando J. Corrales, Ileana M. Cristea, Jennifer E. Van Eyk, Mathias Uhlén, Cecilia Lindskog, Daniel W. Chan, Amos Bairoch, James C. Waddington, Joshua L. Justice, Joshua LaBaer, Henry Rodriguez, Fuchu He, Markus Kostrzewa, Peipei Ping, Rebekah L. Gundry, Peter Stewart, Sanjeeva Srivastava, Sudhir Srivastava, Fabio C. S. Nogueira, Gilberto B. Domont, Yves Vandenbrouck, Maggie P. Y. Lam, Sara Wennersten, Juan Antonio Vizcaino, Marc Wilkins, Jochen M. Schwenk, Emma Lundberg, Nuno Bandeira, Gyorgy Marko-Varga, Susan T. Weintraub, Charles Pineau, Ulrike Kusebauch, Robert L. Moritz, Seong Beom Ahn, Magnus Palmblad, Michael P. Snyder, Ruedi Aebersold, Mark S. Baker

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Neurological diagnoses in hospitalized COVID-19 patients associated with adverse outcomes: A multinational cohort study by Meghan R. Hutch, Jiyeon Son, Trang T. Le, Chuan Hong, Xuan Wang, Zahra Shakeri Hossein Abad, Michele Morris, Alba Gutiérrez-Sacristán, Jeffrey G. Klann, Anastasia Spiridou, Ashley Batugo, Riccardo Bellazzi, Vincent Benoit, Clara-Lea Bonzel, William A. Bryant, Lorenzo Chiudinelli, Kelly Cho, Priyam Das, Tomás González González, David A. Hanauer, Darren W. Henderson, Yuk-Lam Ho, Ne Hooi Will Loh, Adeline Makoudjou, Simran Makwana, Alberto Malovini, Bertrand Moal, Danielle L. Mowery, Antoine Neuraz, Malarkodi Jebathilagam Samayamuthu, Fernando J. Sanz Vidorreta, Emily R. Schriver, Petra Schubert, Jeffery Talbert, Amelia L. M. Tan, Byorn W. L. Tan, Bryce W. Q. Tan, Valentina Tibollo, Patric Tippman, Guillaume Verdy, William Yuan, Paul Avillach, Nils Gehlenborg, Gilbert S. Omenn, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Shyam Visweswaran, Tianxi Cai, Yuan Luo, Zongqi Xia

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Changes in laboratory value improvement and mortality rates over the course of the pandemic: an international retrospective cohort study of hospitalised patients infected with SARS... by Ramakanth Kavuluru, Xuan Wang, Paul Avillach, Florence Bourgeois, Kee Yuan Ngiam, Gabriel A Brat, Isaac Kohane, Yuk-Lam Ho, Yuan Luo, Harrison G Zhang, T Cai, Kelly Cho, Vincent Benoit, Antoine Neuraz, Chuan Hong, Sehi L'Yi, Griffin Weber, Bryce W Q Tan, Alba Gutiérrez-Sacristán, Clara-Lea Bonzel, Nathan P Palmer, Alberto Malovini, Valentina Tibollo, Meghan R Hutch, Molei Liu, Riccardo Bellazzi, Luca Chiovato, Fernando J Sanz Vidorreta, Trang T Le, William Yuan, Bertrand Moal, Michele Morris, David A Hanauer, Sarah Maidlow, Kavishwar Wagholikar, Shawn Murphy, Hossein Estiri, Adeline Makoudjou, Patric Tippmann, Jeffery Klann, Robert W Follett, Nils Gehlenborg, Gilbert S Omenn, Zongqi Xia, Arianna Dagliati, Shyam Visweswaran, Lav P Patel, Danielle L Mowery, Emily R Schriver, Malarkodi Jebathilagam Samayamuthu, Sara Lozano-Zahonero, Daniela Zöller, Amelia L M Tan, Byorn W L Tan, John H Holmes, Petra Schubert, Brett K. Beaulieu-Jones, Miguel Pedrera-Jiménez, Noelia García-Barrio, Pablo Serrano-Balazote, Andrew South

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International electronic health record-derived post-acute sequelae profiles of COVID-19 patients by Harrison G. Zhang, Arianna Dagliati, Zahra Shakeri Hossein Abad, Xin Xiong, Clara-Lea Bonzel, Zongqi Xia, Bryce W. Q. Tan, Paul Avillach, Gabriel A. Brat, Chuan Hong, Michele Morris, Shyam Visweswaran, Lav P. Patel, Alba Gutiérrez-Sacristán, David A. Hanauer, John H. Holmes, Malarkodi Jebathilagam Samayamuthu, Florence T. Bourgeois, Sehi L’Yi, Sarah E. Maidlow, Bertrand Moal, Shawn N. Murphy, Zachary H. Strasser, Antoine Neuraz, Kee Yuan Ngiam, Ne Hooi Will Loh, Gilbert S. Omenn, Andrea Prunotto, Lauren A. Dalvin, Jeffrey G. Klann, Petra Schubert, Fernando J. Sanz Vidorreta, Vincent Benoit, Guillaume Verdy, Ramakanth Kavuluru, Hossein Estiri, Yuan Luo, Alberto Malovini, Valentina Tibollo, Riccardo Bellazzi, Kelly Cho, Yuk-Lam Ho, Amelia L. M. Tan, Byorn W. L. Tan, Nils Gehlenborg, Sara Lozano-Zahonero, Vianney Jouhet, Luca Chiovato, Bruce J. Aronow, Emma M. S. Toh, Wei Gen Scott Wong, Sara Pizzimenti, Kavishwar B. Wagholikar, Mauro Bucalo, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Tianxi Cai, Andrew M. South, Isaac S. Kohane, Griffin M. Weber

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