Conformational study of quaternary epitope region of V1/V2 loop: influence of disulfide bonds and glycosylations by Gnanakaran G, Tian J, Sethi A

Graph-Directed Approach for Downselecting Toxins for Experimental Structure Determination by Rachael A. Mansbach, Srirupa Chakraborty, Timothy Travers, S. Gnanakaran

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A mechanistic understanding of allosteric immune escape pathways in the HIV-1 envelope glycoprotein. by Anurag Sethi, Jianhui Tian, Cynthia A Derdeyn, Bette Korber, S Gnanakaran

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Exploring the Role of Glycans in the Interaction of SARS-CoV-2 RBD and Human Receptor ACE2 by Kien Nguyen, Srirupa Chakraborty, Rachael A. Mansbach, Bette Korber, Sandrasegaram Gnanakaran

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Monatomic ions influence substrate permeation across bacterial microcompartment shells by Daniel S. Trettel, Chris Neale, Mingfei Zhao, S. Gnanakaran, C. Raul Gonzalez-Esquer

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Dynamics of Intact MexAB-OprM Efflux Pump: Focusing on the MexA-OprM Interface by Cesar A. López, Timothy Travers, Klaas M. Pos, Helen I. Zgurskaya, S. Gnanakaran

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Quantification of the Resilience and Vulnerability of HIV-1 Native Glycan Shield at Atomistic Detail by Srirupa Chakraborty, Zachary T. Berndsen, Nicolas W. Hengartner, Bette T. Korber, Andrew B. Ward, S. Gnanakaran

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P09-01. Mutation of the gp120 alpha2 helix in early subtype C HIV-1 infection fails to alter neutralization sensitivity or efficiency of <it>in vitro </it>replication by Derdeyn CA, Gnanakaran S, Allen SA, Mulenga J, Li B, Rong R, Murphy MK

Snails In Silico: A Review of Computational Studies on the Conopeptides by Rachael A. Mansbach, Timothy Travers, Benjamin H. McMahon, Jeanne M. Fair, S. Gnanakaran

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A coarse-grained model for synergistic action of multiple enzymes on cellulose by Asztalos Andrea, Daniels Marcus, Sethi Anurag, Shen Tongye, Langan Paul, Redondo Antonio, Gnanakaran Sandrasegaram

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Membrane perturbing properties of toxin mycolactone from Mycobacterium ulcerans. by Cesar A López, Clifford J Unkefer, Basil I Swanson, Jessica M J Swanson, S Gnanakaran

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Effect of Glycosylation on an Immunodominant Region in the V1V2 Variable Domain of the HIV-1 Envelope gp120 Protein. by Jianhui Tian, Cesar A López, Cynthia A Derdeyn, Morris S Jones, Abraham Pinter, Bette Korber, S Gnanakaran

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Interdependence of multi-drug efflux pumps and quorum sensing systems in Pseudomonas aeruginosa by K. Ganguly, J.L. Phillips, M.S. Wren, P.E. Pardington, S. Gnanakaran, M.E. Wall, G. Gupta

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P09-04. Charge changes in the alpha2-helix in the C3 region of the HIV-1 subtype C envelope mediate neutralization escape by Gnanakaran S, Williamson C, Karim S, Mlisana K, Gray E, Lambson B, Ranchobe N, Moore PL, Morris L

Sequential exposure to specific antibody escape mutations may program neutralization breadth during subtype A HIV-1 infection by Murphy MK, Yue L, Pan R, Boliar S, Sethi A, Karita E, Allen SA, Cormier E, Robinson JE, Gnanakaran S, Hunter E, Kong X, Derdeyn CA

P09-12. Autologous neutralizing antibodies in early subtype C HIV-1 infection target variable regions of envelope and drive multiple pathways of viral escape by Gnanakaran S, Shaw GM, Pinter A, Blackwell JL, Allen SA, Mulenga J, Murphy MK, Haaland RE, Li B, Rong R, Hunter E, Robinson JE, Derdeyn CA

Network analysis uncovers the communication structure of SARS-CoV-2 spike protein identifying sites for immunogen design by Pedro D. Manrique, Srirupa Chakraborty, Rory Henderson, Robert J. Edwards, Rachael Mansbach, Kien Nguyen, Victoria Stalls, Carrie Saunders, Katayoun Mansouri, Priyamvada Acharya, Bette Korber, S. Gnanakaran

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A signature in HIV-1 envelope leader peptide associated with transition from acute to chronic infection impacts envelope processing and infectivity. by Mohammed Asmal, Ina Hellmann, Weimin Liu, Brandon F Keele, Alan S Perelson, Tanmoy Bhattacharya, S Gnanakaran, Marcus Daniels, Barton F Haynes, Bette T Korber, Beatrice H Hahn, George M Shaw, Norman L Letvin

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Escape from autologous neutralizing antibodies in acute/early subtype C HIV-1 infection requires multiple pathways. by Rong Rong, Bing Li, Rebecca M Lynch, Richard E Haaland, Megan K Murphy, Joseph Mulenga, Susan A Allen, Abraham Pinter, George M Shaw, Eric Hunter, James E Robinson, S Gnanakaran, Cynthia A Derdeyn

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Viral escape from neutralizing antibodies in early subtype A HIV-1 infection drives an increase in autologous neutralization breadth. by Murphy, M, Yue, L, Pan, R, Boliar, S, Sethi, A, Tian, J, Pfafferot, K, Karita, E, Allen, SA, Cormier, E, Goepfert, P, Borrow, P, Robinson, J, Gnanakaran, S, Hunter, E, Kong, X, Derdeyn, C