An exploratory algorithm to identify intra-host recombinant viral sequences. by Salemi, M, Gray, R, Goodenow, M

Phylodynamics of HIV-1 in lymphoid and non-lymphoid tissues reveals a central role for the thymus in emergence of CXCR4-using quasispecies by Salemi, M, Burkhardt, B, Gray, R, Ghaffari, G, Sleasman, J, Goodenow, M

Unexpected maintenance of hepatitis C viral diversity following liver transplantation. by Gray, R, Strickland, S, Veras, N, Goodenow, M, Pybus, O, Lemon, S, Fried, M, Nelson, DR, Salemi, M

High intrapatient HIV-1 evolutionary rate is associated with CCR5-to-CXCR4 coreceptor switch by Mild, M, Albert, J, Esbjörnsson, J, Gray, R, Kvist, A, Lemey, P, Goodenow, M, Salemi, M, Fenyö, E, Medstrand, P

Efficient transmission and persistence of low-frequency SIVmac251 variants in CD8-depleted rhesus macaques with different neuropathology. by Strickland, S, Gray, R, Lamers, S, Burdo, T, Huenink, E, Nolan, D, Nowlin, B, Alvarez, X, Midkiff, C, Goodenow, M, Williams, K, Salemi, M

Significant genetic heterogeneity of the SIVmac251 viral swarm derived from different sources. by Strickland, S, Gray, R, Lamers, S, Burdo, T, Huenink, E, Nolan, D, Nowlin, B, Alvarez, X, Midkiff, C, Goodenow, M, Williams, K, Salemi, M

Spatial phylodynamics of HIV-1 epidemic emergence in east Africa. by Gray, R, Tatem, A, Lamers, S, Hou, W, Laeyendecker, O, Serwadda, D, Sewankambo, N, Gray, R, Wawer, M, Quinn, T, Goodenow, M, Salemi, M

Multiple independent lineages of HIV-1 persist in breast milk and plasma. by Gray, R, Salemi, M, Lowe, A, Nakamura, K, Decker, W, Sinkala, M, Kankasa, C, Mulligan, C, Thea, D, Kuhn, L, Aldrovandi, G, Goodenow, M

Molecular epidemiology of HIV type 1 CRF02_AG in Cameroon and African patients living in Italy. by Véras, N, Santoro, M, Gray, R, Tatem, A, Lo Presti, A, Olearo, F, Cappelli, G, Colizzi, V, Takou, D, Torimiro, J, Russo, G, Callegaro, A, Salpini, R, D'Arrigo, R, Perno, C, Goodenow, M, Ciccozzi, M, Salemi, M