BRIE: transcriptome-wide splicing quantification in single cells by Yuanhua Huang, Guido Sanguinetti

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BRIE2: computational identification of splicing phenotypes from single-cell transcriptomic experiments by Yuanhua Huang, Guido Sanguinetti

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Learning and Designing Stochastic Processes from Logical Constraints by Luca Bortolussi, Guido Sanguinetti

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A stochastic hybrid model of a biological filter by Andrea Ocone, Guido Sanguinetti

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SHARE-Topic: Bayesian interpretable modeling of single-cell multi-omic data by Nour El Kazwini, Guido Sanguinetti

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Melissa: Bayesian clustering and imputation of single-cell methylomes by Chantriolnt-Andreas Kapourani, Guido Sanguinetti

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SCRaPL: A Bayesian hierarchical framework for detecting technical associates in single cell multiomics data. by Christos Maniatis, Catalina A Vallejos, Guido Sanguinetti

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On the Robustness of Temporal Properties for Stochastic Models by Ezio Bartocci, Luca Bortolussi, Laura Nenzi, Guido Sanguinetti

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The MOBSTER R package for tumour subclonal deconvolution from bulk DNA whole-genome sequencing data by Giulio Caravagna, Guido Sanguinetti, Trevor A. Graham, Andrea Sottoriva

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A subsystems approach for parameter estimation of ODE models of hybrid systems by Guido Sanguinetti, Stephen Gilmore, Andrea Ocone, Allan Clark, Anastasis Georgoulas

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diffBUM-HMM: a robust statistical modeling approach for detecting RNA flexibility changes in high-throughput structure probing data by Paolo Marangio, Ka Ying Toby Law, Guido Sanguinetti, Sander Granneman

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scMET: Bayesian modeling of DNA methylation heterogeneity at single-cell resolution by Chantriolnt-Andreas Kapourani, Ricard Argelaguet, Guido Sanguinetti, Catalina A. Vallejos

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Neural field models for latent state inference: Application to large-scale neuronal recordings. by Michael E Rule, David Schnoerr, Matthias H Hennig, Guido Sanguinetti

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Quantitative analysis questions the role of MeCP2 as a global regulator of alternative splicing. by Kashyap Chhatbar, Justyna Cholewa-Waclaw, Ruth Shah, Adrian Bird, Guido Sanguinetti

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Analysis of transcript changes in a heme-deficient mutant of Escherichia coli in response to CORM-3 [Ru(CO)3Cl(glycinate)] by Jayne Louise Wilson, Samantha McLean, Ronald Begg, Guido Sanguinetti, Robert K. Poole

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Systems analysis of transcription factor activities in environments with stable and dynamic oxygen concentrations by Matthew D. Rolfe, Andrea Ocone, Melanie R. Stapleton, Simon Hall, Eleanor W. Trotter, Robert K. Poole, Guido Sanguinetti, Jeffrey Green

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Kinetic CRAC uncovers a role for Nab3 in determining gene expression profiles during stress by Rob van Nues, Gabriele Schweikert, Erica de Leau, Alina Selega, Andrew Langford, Ryan Franklin, Ira Iosub, Peter Wadsworth, Guido Sanguinetti, Sander Granneman

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MeCP2 recognizes cytosine methylated tri-nucleotide and di-nucleotide sequences to tune transcription in the mammalian brain. by Sabine Lagger, John C Connelly, Gabriele Schweikert, Shaun Webb, Jim Selfridge, Bernard H Ramsahoye, Miao Yu, Chuan He, Guido Sanguinetti, Lawrence C Sowers, Malcolm D Walkinshaw, Adrian Bird

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scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells by Stephen J. Clark, Ricard Argelaguet, Chantriolnt-Andreas Kapourani, Thomas M. Stubbs, Heather J. Lee, Celia Alda-Catalinas, Felix Krueger, Guido Sanguinetti, Gavin Kelsey, John C. Marioni, Oliver Stegle, Wolf Reik

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