Natalie 2.0: Sparse Global Network Alignment as a Special Case of Quadratic Assignment by Mohammed El-Kebir, Jaap Heringa, Gunnar W. Klau

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Coco: conservation design for optimal ecological connectivity by Eline S. van Mantgem, Johanna Hillebrand, Lukas Rose, Gunnar W. Klau

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eXamine: Visualizing annotated networks in Cytoscape [version 1; referees: 1 approved, 2 approved with reservations] by Philipp Spohr, Kasper Dinkla, Gunnar W. Klau, Mohammed El-Kebir

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Current composite-feature classification methods do not outperform simple single-genes classifiers in breast cancer prognosis by Christine eStaiger, Christine eStaiger, Sidney eCadot, Balázs eGyörffy, Lodewyk FA Wessels, Lodewyk FA Wessels, Gunnar W Klau, Gunnar W Klau

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Using the longest run subsequence problem within homology-based scaffolding by Sven Schrinner, Manish Goel, Michael Wulfert, Philipp Spohr, Korbinian Schneeberger, Gunnar W. Klau

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SuperDendrix algorithm integrates genetic dependencies and genomic alterations across pathways and cancer types by Tae Yoon Park, Mark D.M. Leiserson, Gunnar W. Klau, Benjamin J. Raphael

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Automated partial atomic charge assignment for drug-like molecules: a fast knapsack approach by Martin S. Engler, Bertrand Caron, Lourens Veen, Daan P. Geerke, Alan E. Mark, Gunnar W. Klau

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Genetic polyploid phasing from low-depth progeny samples by Sven Schrinner, Rebecca Serra Mari, Richard Finkers, Paul Arens, Björn Usadel, Tobias Marschall, Gunnar W. Klau

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A critical evaluation of network and pathway-based classifiers for outcome prediction in breast cancer. by Christine Staiger, Sidney Cadot, Raul Kooter, Marcus Dittrich, Tobias Müller, Gunnar W Klau, Lodewyk F A Wessels

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Insights into gut microbiomes in stem cell transplantation by comprehensive shotgun long-read sequencing by Philipp Spohr, Sebastian Scharf, Anna Rommerskirchen, Birgit Henrich, Paul Jäger, Gunnar W. Klau, Rainer Haas, Alexander Dilthey, Klaus Pfeffer

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Haplotype threading: accurate polyploid phasing from long reads by Sven D. Schrinner, Rebecca Serra Mari, Jana Ebler, Mikko Rautiainen, Lancelot Seillier, Julia J. Reimer, Björn Usadel, Tobias Marschall, Gunnar W. Klau

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Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data by Rebecca Serra Mari, Sven Schrinner, Richard Finkers, Freya Maria Rosemarie Ziegler, Paul Arens, Maximilian H.-W. Schmidt, Björn Usadel, Gunnar W. Klau, Tobias Marschall

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Single-cell transcriptomics defines heterogeneity of epicardial cells and fibroblasts within the infarcted murine heart by Julia Hesse, Christoph Owenier, Tobias Lautwein, Ria Zalfen, Jonas F Weber, Zhaoping Ding, Christina Alter, Alexander Lang, Maria Grandoch, Norbert Gerdes, Jens W Fischer, Gunnar W Klau, Christoph Dieterich, Karl Köhrer, Jürgen Schrader

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Ancient dispersal of the human fungal pathogen Cryptococcus gattii from the Amazon rainforest. by Ferry Hagen, Paulo C Ceresini, Itzhack Polacheck, Hansong Ma, Filip van Nieuwerburgh, Toni Gabaldón, Sarah Kagan, E Rhiannon Pursall, Hans L Hoogveld, Leo J J van Iersel, Gunnar W Klau, Steven M Kelk, Leen Stougie, Karen H Bartlett, Kerstin Voelz, Leszek P Pryszcz, Elizabeth Castañeda, Marcia Lazera, Wieland Meyer, Dieter Deforce, Jacques F Meis, Robin C May, Corné H W Klaassen, Teun Boekhout

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