Simultaneous computational discovery of DNA regulatory motifs and transcription factor binding constraints at high spatial resolution by Guo, Yuchun

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High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints by Guo, Yuchun, Mahony, Shaun

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Modular combinatorial binding among human trans-acting factors reveals direct and indirect factor binding by Guo, Yuchun, Gifford, David K

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IDR2D identifies reproducible genomic interactions by Krismer, Konstantin, Guo, Yuchun, Gifford, David K

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High resolution discovery of chromatin interactions by Guo, Yuchun, Krismer, Konstantin, Closser, Michael, Wichterle, Hynek, Gifford, David K

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A novel k-mer set memory (KSM) motif representation improves regulatory variant prediction by Guo, Yuchun, Tian, Kevin J., Zeng, Haoyang, Guo, Xiaoyun, Gifford, David K

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Expression of Terminal Effector Genes in Mammalian Neurons Is Maintained by a Dynamic Relay of Transient Enhancers by Rhee, Ho Sung, Closser, Michael, Guo, Yuchun, Bashkirova, Elizaveta V, Tan, G Christopher, Gifford, David K, Wichterle, Hynek

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Expression of Terminal Effector Genes in Mammalian Neurons Is Maintained by a Dynamic Relay of Transient Enhancers by Rhee, Ho Sung, Closser, Michael, Guo, Yuchun, Bashkirova, Elizaveta V., Tan, G. Christopher, Gifford, David K., Wichterle, Hynek

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Identification of New Branch Points and Unconventional Introns in Saccharomyces Cerevisiae by Gould, Genevieve Michelle, Paggi, Joseph M., Guo, Yuchun, Phizicky, David Vincent, Zinshteyn, Boris, Wang, Eric T, Gilbert, Wendy, Gifford, David K, Burge, Christopher B

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High-throughput mapping of regulatory DNA by Kooshesh, Kameron, Banerjee, Budhaditya, Emons, Bart J M, Sherwood, Richard I, Rajagopal, Nisha, Srinivasan, Sharanya, Guo, Yuchun, Edwards, Matthew D, Syed, Tahin Fahmid, Gifford, David K

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An expansion of the non-coding genome and its regulatory potential underlies vertebrate neuronal diversity by Closser, Michael, Guo, Yuchun, Wang, Ping, Patel, Tulsi, Jang, Sumin, Hammelman, Jennifer, De Nooij, Joriene C, Kopunova, Rachel, Mazzoni, Esteban O, Ruan, Yijun, Gifford, David K, Wichterle, Hynek

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