Evidence for HIV-1 cure after CCR5Δ32/Δ32 allogeneic haemopoietic stem-cell transplantation 30 months post analytical treatment interruption: a case report Por Gupta, RK, Peppa, D, Hill, AL, Pace, M, Alrubayyi, A

HIV transmission dynamics and population-wide drug resistance in rural South Africa Por Kemp, SA, Kamelian, K, Cuadros, DF, Cheng, MTK, Okango, E, Hanekom, W, Ndung’u, T, Pillay, D, Bonsall, D, Wong, EB, Tanser, F, Siedner, MJ, Gupta, RK

A G1‐like state allows HIV‐1 to bypass SAMHD1 restriction in macrophages Por Mlcochova, P, Sutherland, KA, Watters, SA, Bertoli, C, de Bruin, RA, Rehwinkel, J, Neil, SJ, Lenzi, GM, Kim, B, Khwaja, A, Gage, MC, Georgiou, C, Chittka, A, Yona, S, Noursadeghi, M, Towers, GJ, Gupta, RK

High prevalence of integrase mutation L74I in West African HIV-1 subtypes prior to integrase inhibitor treatment Por El Bouzidi, K, Kemp, SA, Datir, RP, Murtala-Ibrahim, F, Aliyu, A, Kwaghe, V, Frampton, D, Roy, S, Breuer, J, Sabin, CA, Ogbanufe, O, Charurat, ME, Bonsall, D, Golubchik, T, Fraser, C, Dakum, P, Ndembi, N, Gupta, RK

Collaborative update of a rule-based expert system for HIV-1 genotypic resistance test interpretation Por Paredes, R, Tzou, PL, Van Zyl, G, Barrow, G, Camacho, R, Carmona, S, Grant, PM, Gupta, RK, Hamers, RL, Harrigan, PR, Jordan, MR, Kantor, R, Katzenstein, DA, Kuritzkes, DR, Maldarelli, F, Otelea, D, Wallis, CL, Schapiro, JM, Shafer, RW

B cell receptor repertoire kinetics after SARS-CoV-2 infection and vaccination Por Kotagiri, P, Mescia, F, Rae, WM, Bergamaschi, L, Tuong, ZK, Turner, L, Hunter, K, Gerber, PP, Hosmillo, M, Hess, C, Clatworthy, MR, Goodfellow, IG, Matheson, NJ, McKinney, EF, Wills, MR, Gupta, RK, Bradley, JR, Bashford-Rogers, RJM, Lyons, PA, Smith, KGC

SARS-CoV-2 human challenge reveals biomarkers that discriminate early and late phases of respiratory viral infections Por Rosenheim, J, Gupta, RK, Thakker, C, Mann, T, Bell, LCK, Broderick, CM, Madon, K, Papargyris, L, Dayananda, P, Kwok, AJ, Greenan-Barrett, J, Wagstaffe, HR, Conibear, E, Fenn, J, Hakki, S, Lindeboom, RGH, Dratva, LM, Lemetais, B, Weight, CM, Venturini, C, Kaforou, M, Levin, M, Kalinova, M, Mann, AJ, Knight, JC

HIV-1 drug resistance before initiation or re-initiation of first-line antiretroviral therapy in low-income and middle-income countries: a systematic review and meta-regression ana... Por Gupta, RK, Gregson, J, Parkin, N, Haile-Selassie, H, Tanuri, A, Forero, L, Kaleebu, P, Watera, C, Aghokeng, A, Mutenda, N, Dzangare, J, Hone, S, Hang, ZZ, Garcia, J, Garcia, Z, Marchorro, P, Beteta, E, Giron, A, Hamers, R, Inzaule, S, Frenkel, LM, Chung, MH, de Oliveira, T, Pillay, D, Naidoo, K, Kharsany, A, Kugathasan, R, Cutino, T, Hunt, G, Rios, S, Doherty, M, Jordan, MR, Bertagnolio, S

Innovative vaccine approaches-a Keystone Symposia report Por Cable, J, Rappuoli, R, Klemm, EJ, Kang, G, Mutreja, A, Wright, GJ, Pizza, M, Castro, SA, Hoffmann, JP, Alter, G, Carfi, A, Pollard, AJ, Krammer, F, Gupta, RK, Wagner, CE, Machado, V, Modjarrad, K, Corey, L, B Gilbert, P, Dougan, G, Lurie, N, Bjorkman, PJ, Chiu, C, Nemes, E, Gordon, SB, Steer, AC, Rudel, T, Blish, CA, Sandberg, JT, Brennan, K, Klugman, KP, Stuart, LM, Madhi, SA, Karp, CL

Prospective validation of the 4C prognostic models for adults hospitalised with COVID-19 using the ISARIC WHO Clinical Characterisation Protocol Por Knight, SR, Gupta, RK, Ho, A, Pius, R, Buchan, I, Carson, G, Drake, TM, Dunning, J, Fairfield, CJ, Gamble, C, Green, CA, Halpin, S, Hardwick, HE, Holden, KA, Horby, PW, Jackson, C, Mclean, KA, Merson, L, Nguyen-Van-Tam, JS, Norman, L, Olliaro, PL, Pritchard, MG, Russell, CD, Shaw, CA, Sheikh, A, Solomon, T, Sudlow, C, Swann, OV, Turtle, LCW, Openshaw, PJM, Baillie, JK, Docherty, A, Semple, MG, Noursadeghi, M, Harrison, EM

SARS-CoV-2 evolution during treatment of chronic infection Por Kemp, SA, Collier, DA, Datir, RP, Ferreira, IATM, Gayed, S, Jahun, A, Hosmillo, M, Rees-Spear, C, Mlcochova, P, Lumb, IU, Roberts, DJ, Chandra, A, Temperton, N, Sharrocks, K, Blane, E, Modis, Y, Leigh, KE, Briggs, JAG, van Gils, MJ, Smith, KGC, Bradley, JR, Smith, C, Doffinger, R, Ceron-Gutierrez, L, Barcenas-Morales, G, Pollock, DD, Goldstein, RA, Smielewska, A, Skittrall, JP, Gouliouris, T, Goodfellow, IG, Gkrania-Klotsas, E, Illingworth, CJR, McCoy, LE, Gupta, RK

Longitudinal analysis reveals that delayed bystander CD8+ T cell activation and early immune pathology distinguish severe COVID-19 from mild disease Por Bergamaschi, L, Mescia, F, Turner, L, Hanson, AL, Kotagiri, P, Dunmore, BJ, Ruffieux, H, De Sa, A, Huhn, O, Morgan, MD, Gerber, PP, Wills, MR, Baker, S, Calero-Nieto, FJ, Doffinger, R, Dougan, G, Elmer, A, Goodfellow, IG, Gupta, RK, Hosmillo, M, Hunter, K, Kingston, N, Lehner, PJ, Matheson, NJ, Nicholson, JK, Petrunkina, AM, Richardson, S, Saunders, C, Thaventhiran, JED, Toonen, EJM, Weekes, MP, Göttgens, B, Toshner, M, Hess, C, Bradley, JR, Lyons, PA, Smith, KGC

Development and validation of the ISARIC 4C Deterioration model for adults hospitalised with COVID-19: a prospective cohort study Por Gupta, RK, Harrison, EM, Ho, A, Docherty, AB, Knight, SR, van Smeden, M, Abubakar, I, Lipman, M, Quartagno, M, Pius, R, Buchan, I, Carson, G, Drake, TM, Dunning, J, Fairfield, CJ, Gamble, C, Green, CA, Halpin, S, Hardwick, HE, Holden, KA, Horby, PW, Jackson, C, Mclean, KA, Merson, L, Nguyen-Van-Tam, JS, Norman, L, Olliaro, PL, Pritchard, MG, Russell, CD, Scott-Brown, J, Shaw, CA, Sheikh, A, Solomon, T, Sudlow, C, Swann, OV, Turtle, L, Openshaw, PJM, Baillie, JK, Semple, MG, Noursadeghi, M, ISARIC4C Investigators

Genomic characterization and epidemiology of an emerging SARS-CoV-2 variant in Delhi, India Por Dhar, MS, Marwal, R, Vs, R, Ponnusamy, K, Jolly, B, Bhoyar, RC, Sardana, V, Naushin, S, Rophina, M, Mellan, TA, Mishra, S, Whittaker, C, Fatihi, S, Datta, M, Singh, P, Sharma, U, Ujjainiya, R, Bhatheja, N, Divakar, MK, Singh, MK, Imran, M, Senthivel, V, Maurya, R, Jha, N, Mehta, P, A, V, Sharma, P, Vr, A, Chaudhary, U, Soni, N, Thukral, L, Flaxman, S, Bhatt, S, Pandey, R, Dash, D, Faruq, M, Lall, H, Gogia, H, Madan, P, Kulkarni, S, Chauhan, H, Sengupta, S, Kabra, S, Indian SARS-CoV-2 Genomics Consortium (INSACOG)‡, Gupta, RK, Singh, SK, Agrawal, A, Rakshit, P

Combined point-of-care nucleic acid and antibody testing for SARS-CoV-2 following emergence of D614G spike variant Por Mlcochova, P, Collier, D, Ritchie, A, Assennato, SM, Hosmillo, M, Goel, N, Meng, B, Chatterjee, K, Mendoza, V, Temperton, N, Kiss, L, James, LC, Ciazynska, KA, Xiong, X, Briggs, JAG, Nathan, JA, Mescia, F, Bergamaschi, L, Zhang, H, Barmpounakis, P, Demeris, N, Skells, R, Lyons, PA, Bradley, J, Baker, S, Allain, JP, Smith, KGC, Bousfield, R, Wilson, M, Sparkes, D, Amoroso, G, Gkrania-Klotsas, E, Hardwick, S, Boyle, A, Goodfellow, I, Gupta, RK, Baker, S, Dougan, G, Gupta, R, Lehner, PJ, Lyons, P, Matheson, NJ, Toshner, M, Weekes, MP, Brown, N, Curran, M, Palmar, S, Enoch, D, Chapman, D, Shaw, A

Implementation of corticosteroids in treatment of COVID-19 in the ISARIC WHO Clinical Characterisation Protocol UK: prospective, cohort study Por Närhi, F, Moonesinghe, SR, Shenkin, SD, Drake, TM, Mulholland, RH, Donegan, C, Dunning, J, Fairfield, CJ, Girvan, M, Hardwick, HE, Ho, A, Leeming, G, Nguyen-Van-Tam, JS, Pius, R, Russell, CD, Shaw, CA, Spencer, RG, Turtle, L, Openshaw, PJM, Baillie, JK, Harrison, EM, Semple, MG, Docherty, AB, Openshaw, PJ, Carson, G, Alex, B, Andrikopoulos, P, Bach, B, Barclay, WS, Bogaert, D, Chand, M, Chechi, K, Cooke, GS, da Silva Filipe, A, de Silva, T, dos Santos Correia, G, Dumas, ME, Fletcher, T, Green, CA, Greenhalf, W, Griffin, J, Gupta, RK, Hiscox, JA, Ho, AY, Horby, PW, Ijaz, S, Khoo, S, Klenerman, P, Law, A, Lewis, M, Mentzer, AJ, Sigfrid, L