Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species. by Lorenzi, Hernan, Thiagarajan, Mathangi, Haas, Brian J., Wortman, Jennifer, Hall, Neil, Caler, Elisabet

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De novo reconstruction of the Toxoplasma gondii transcriptome improves on the current genome annotation and reveals alternatively spliced transcripts and putative long non-coding R... by Hassan, Musa A., Melo, Mariane Bandeira, Haas, Brian J., Saeij, Jeroen, Jensen, Kirk D.

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Sequencing <it>Medicago truncatula </it>expressed sequenced tags using 454 Life Sciences technology by Xiao Yongli, May Gregory D, Goldberg Susanne MD, Haas Brian J, Cheung Foo, Town Christopher D

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Characterization of paralogous protein families in rice by Zhu Wei, Haas Brian J, Nobuta Kan, Egan Amy, Ouyang Shu, Lin Haining, Gu Xun, Silva Joana C, Meyers Blake C, Buell C Robin

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Characterization of paralogous protein families in rice by Lin, Haining, Ouyang, Shu, Egan, Amy, Nobuta, Kan, Zhu, Wei, Gu, Xun, Silva, Joana C, Meyers, Blake C, Buell, C. Robin, Haas, Brian J.

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Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells by Kowalczyk, Monika S., Tirosh, Itay, Heckl, Dirk, Rao, Tata Nageswara, Dixit, Atray, Haas, Brian J., Schneider, Rebekka K., Wagers, Amy J., Ebert, Benjamin L., Regev, Aviv

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A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation by Fields, Alexander P., Rodriguez, Edwin H., Jovanovic, Marko, Stern-Ginossar, Noam, Haas, Brian J., Mertins, Philipp, Raychowdhury, Raktima, Hacohen, Nir, Carr, Steven A., Ingolia, Nicholas T., Regev, Aviv, Weissman, Jonathan S.

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Complete reannotation of the <it>Arabidopsis </it>genome: methods, tools, protocols and the final release by Farzad Maryam, Yu Chunhui, Chan Agnes P, Maiti Rama, Smith Roger K, Hannick Linda I, Ronning Catherine M, Wortman Jennifer R, Haas Brian J, Wu Dongying, White Owen, Town Christopher D

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Comparative Genomics of Enterococci: Variation in Enterococcus faecalis, Clade Structure in E. faecium, and Defining Characteristics of E. gallinarum and E. casseliflavus by Palmer, Kelli L., Godfrey, Paul, Griggs, Allison, Kos, Veronica N., Zucker, Jeremy, Desjardins, Christopher A., Cerqueira, Gustavo, Gevers, Dirk, Walker, Suzanne, Wortman, Jennifer, Feldgarden, Michael, Haas, Brian J., Birren, Bruce W., Gilmore, Michael S.

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Structure and evolution of a proviral locus of <it>Glyptapanteles indiensis </it>bracovirus by Fadrosh Douglas W, Pedroni Monica J, Schatz Michael C, Fuester Roger W, Tallon Luke J, Hostetler Jessica B, Gundersen-Rindal Dawn E, Desjardins Christopher A, Haas Brian J, Toms Bradley S, Chen Dan, Nene Vishvanath

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Reply to Guy et al.: Support for a bottleneck in the 2011 Escherichia coli O104:H4 outbreak in Germany by Grad, Y. H., Lipsitch, M., Griggs, Allison, Haas, Brian J., Shea, T. P., McCowan, C., Montmayeur, A., FitzGerald, M., Wortman, J. R., Krogfelt, K. A., Bingen, E., Weill, F.-X., Tietze, E., Flieger, A., Nusbaum, Chad, Birren, Bruce W., Hung, Deborah T., Hanage, W. P.

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De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity by Haas, Brian J., Papanicolaou, Alexie, Yassour, Moran, Grabherr, Manfred G., Blood, Philip D., Bowden, Joshua, Couger, Matthew Brian, Eccles, David, Li, Bo, Lieber, Matthias, MacManes, Matthew D., Ott, Michael, Orvis, Joshua, Pochet, Nathalie, Strozzi, Francesco, Weeks, Nathan, Westerman, Rick, William, Thomas, Dewey, Colin N., Henschel, Robert, LeDuc, Richard D., Friedman, Nir, Regev, Aviv

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The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation by Wallrapp, Antonia, Riesenfeld, Samantha J., Burkett, Patrick R., Abdulnour, Raja-Elie E., Nyman, Jackson, Dionne, Danielle, Hofree, Matan, Cuoco, Michael S., Rodman, Christopher, Farouq, Daneyal, Haas, Brian J., Tickle, Timothy L., Trombetta, John J., Baral, Pankaj, Klose, Christoph S. N., Mahlakõiv, Tanel, Artis, David, Rozenblatt-Rosen, Orit, Chiu, Isaac M., Levy, Bruce D., Kowalczyk, Monika S., Regev, Aviv, Kuchroo, Vijay K.

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Insights into the Musa genome: Syntenic relationships to rice and between Musa species by Althoff Ryan, Haas Brian J, Cheung Foo, Ronning Catherine M, Matsumoto Takashi, Kanamori Hiroyuki, Vilarinhos Alberto D, Garsmeur Olivier, D'Hont Angélique, Santos Candice MR, da Silva Felipe R, Leebens-Mack Jim, Blanc Guillaume, Ruiz Manuel, Ciampi Ana Y, Piffanelli Pietro, Lescot Magali, Arbogast Tammy, Hine Erin, Pappas Georgios J, Sasaki Takuji, Souza Manoel T, Miller Robert NG, Glaszmann Jean-Christophe, Town Christopher D

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