Identifying the genetic determinants of transcription factor activity by Eunjee Lee, Harmen J Bussemaker

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Building accurate sequence-to-affinity models from high-throughput in vitro protein-DNA binding data using FeatureREDUCE by Todd R Riley, Allan Lazarovici, Richard S Mann, Harmen J Bussemaker

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Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression. by André Boorsma, Xiang-Jun Lu, Anna Zakrzewska, Frans M Klis, Harmen J Bussemaker

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Global chromatin domain organization of the Drosophila genome. by Elzo de Wit, Ulrich Braunschweig, Frauke Greil, Harmen J Bussemaker, Bas van Steensel

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Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein–DNA binding by Satyanarayan Rao, Tsu-Pei Chiu, Judith F. Kribelbauer, Richard S. Mann, Harmen J. Bussemaker, Remo Rohs

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Transcription factor paralogs orchestrate alternative gene regulatory networks by context-dependent cooperation with multiple cofactors by Siqian Feng, Chaitanya Rastogi, Ryan Loker, William J. Glassford, H. Tomas Rube, Harmen J. Bussemaker, Richard S. Mann

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Paired hormone response elements predict caveolin-1 as a glucocorticoid target gene. by Marinus F van Batenburg, Hualing Li, J Annelies Polman, Servane Lachize, Nicole A Datson, Harmen J Bussemaker, Onno C Meijer

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Quantitative Analysis of the DNA Methylation Sensitivity of Transcription Factor Complexes by Judith F. Kribelbauer, Oleg Laptenko, Siying Chen, Gabriella D. Martini, William A. Freed-Pastor, Carol Prives, Richard S. Mann, Harmen J. Bussemaker

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Transcription factor regulation of eQTL activity across individuals and tissues. by Elise D Flynn, Athena L Tsu, Silva Kasela, Sarah Kim-Hellmuth, Francois Aguet, Kristin G Ardlie, Harmen J Bussemaker, Pejman Mohammadi, Tuuli Lappalainen

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