Editorial: Systems immunology to advance vaccine development by Jue Hou, Helder I. Nakaya, Helder I. Nakaya

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A reasonable request for true data sharing by Tiago Lubiana, Helder I. Nakaya

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Antigenicity prediction and vaccine recommendation of human influenza virus A (H3N2) using convolutional neural networks by Eva K. Lee, Haozheng Tian, Helder I. Nakaya

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Poly I:C elicits broader and stronger humoral and cellular responses to a Plasmodium vivax circumsporozoite protein malaria vaccine than Alhydrogel in mice by Tiffany B. L. Costa-Gouvea, Katia S. Françoso, Rodolfo F. Marques, Alba Marina Gimenez, Ana C. M. Faria, Leonardo M. Cariste, Mariana R. Dominguez, José Ronnie C. Vasconcelos, Helder I. Nakaya, Helder I. Nakaya, Helder I. Nakaya, Eduardo L. V. Silveira, Irene S. Soares

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Chikungunya patient transcriptional signatures faithfully recapitulated in a C57BL/6J mouse model by Cameron R. Bishop, Felipe Ten Caten, Helder I. Nakaya, Andreas Suhrbier, Andreas Suhrbier

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Differentiation of Memory CD8 T Cells Unravel Gene Expression Pattern Common to Effector and Memory Precursors by Vanessa Neitzke-Montinelli, Carolina Calôba, Guilherme Melo, Bianca B. Frade, Enzo Caramez, Luciano Mazzoccoli, André N. A. Gonçalves, Helder I. Nakaya, Helder I. Nakaya, Renata M. Pereira, Miriam B. F. Werneck, João P. B. Viola

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The single-cell transcriptome of mTECs and CD4+ thymocytes under adhesion revealed heterogeneity of mTECs and a network controlled by Aire and lncRNAs by Cíntia J. Monteiro, Max J. Duarte, Mayara Cristina V. Machado, Romário S. Mascarenhas, Patrícia V. Bonini Palma, Henry D. Mogollón García, Helder I. Nakaya, Helder I. Nakaya, Thiago M. Cunha, Eduardo A. Donadi, Geraldo A. Passos, Geraldo A. Passos, Geraldo A. Passos

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Ten quick tips for harnessing the power of ChatGPT in computational biology. by Tiago Lubiana, Rafael Lopes, Pedro Medeiros, Juan Carlo Silva, Andre Nicolau Aquime Goncalves, Vinicius Maracaja-Coutinho, Helder I Nakaya

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Methods for predicting vaccine immunogenicity and reactogenicity by Patrícia Gonzalez-Dias, Eva K. Lee, Sara Sorgi, Diógenes S. de Lima, Alysson H. Urbanski, Eduardo Lv Silveira, Helder I. Nakaya

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Comparative transcriptomic analysis of long noncoding RNAs in Leishmania-infected human macrophages by Juliane C. R. Fernandes, Juliane C. R. Fernandes, André N. A. Gonçalves, Lucile M. Floeter-Winter, Helder I. Nakaya, Sandra M. Muxel

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Chikungunya-Driven Gene Expression Linked to Osteoclast Survival and Chronic Arthralgia by Alysson Henrique Urbanski, Vanessa E. Maso, Felipe M. Martins, André Guilherme da Costa-Martins, Ana Paula B. do Nascimento Oliveira, Helder I. Nakaya

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Total parasite biomass but not peripheral parasitaemia is associated with endothelial and haematological perturbations in Plasmodium vivax patients by João L Silva-Filho, João CK Dos-Santos, Carla Judice, Dario Beraldi, Kannan Venugopal, Diogenes Lima, Helder I Nakaya, Erich V De Paula, Stefanie CP Lopes, Marcus VG Lacerda, Matthias Marti, Fabio TM Costa

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Automatic detection of the parasite Trypanosoma cruzi in blood smears using a machine learning approach applied to mobile phone images by Mauro César Cafundó Morais, Diogo Silva, Matheus Marques Milagre, Maykon Tavares de Oliveira, Thaís Pereira, João Santana Silva, Luciano da F. Costa, Paola Minoprio, Roberto Marcondes Cesar Junior, Ricardo Gazzinelli, Marta de Lana, Helder I. Nakaya

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Baseline gene signatures of reactogenicity to Ebola vaccination: a machine learning approach across multiple cohorts by Patrícia Conceição Gonzalez Dias Carvalho, Patrícia Conceição Gonzalez Dias Carvalho, Thiago Dominguez Crespo Hirata, Leandro Yukio Mano Alves, Isabelle Franco Moscardini, Ana Paula Barbosa do Nascimento, André G. Costa-Martins, André G. Costa-Martins, Sara Sorgi, Ali M. Harandi, Ali M. Harandi, Daniela M. Ferreira, Daniela M. Ferreira, Eleonora Vianello, Mariëlle C. Haks, Tom H. M. Ottenhoff, Francesco Santoro, Paola Martinez-Murillo, Angela Huttner, Angela Huttner, Claire-Anne Siegrist, Donata Medaglini, Helder I. Nakaya, Helder I. Nakaya

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Human Transcriptomic Response to the VSV-Vectored Ebola Vaccine by Francesco Santoro, Alessia Donato, Simone Lucchesi, Sara Sorgi, Alice Gerlini, Marielle C. Haks, Tom H. M. Ottenhoff, Patricia Gonzalez-Dias, VSV-EBOVAC Consortium, VSV-EBOPLUS Consortium, Helder I. Nakaya, Angela Huttner, Claire-Anne Siegrist, Donata Medaglini, Gianni Pozzi

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Tucuxi-BLAST: Enabling fast and accurate record linkage of large-scale health-related administrative databases through a DNA-encoded approach by José Deney Araujo, Juan Carlo Santos-e-Silva, André Guilherme Costa-Martins, Vanderson Sampaio, Daniel Barros de Castro, Robson F. de Souza, Jeevan Giddaluru, Pablo Ivan P. Ramos, Robespierre Pita, Mauricio L. Barreto, Manoel Barral-Netto, Helder I. Nakaya

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CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses by Pedro S. T. Russo, Gustavo R. Ferreira, Lucas E. Cardozo, Matheus C. Bürger, Raul Arias-Carrasco, Sandra R. Maruyama, Thiago D. C. Hirata, Diógenes S. Lima, Fernando M. Passos, Kiyoshi F. Fukutani, Melissa Lever, João S. Silva, Vinicius Maracaja-Coutinho, Helder I. Nakaya

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ALTERAÇÕES TRANSCRICIONAIS PRECOCEMENTE ENVOLVIDAS NA PROGRESSÃO DE PACIENTES PARA DOENÇA ARTICULAR CRÔNICA PÓS-CHIKUNGUNYA by Mariana Severo Ramundo, Guilherme Cordenonsi da Fonseca, Alexandra L. Gerber, Ana Paula Guimarães, Erika Regina Manuli, Marina Farrel Côrtes, Geovana Maria Pereira, Otavio Brustolini, Patrícia Brasil, Helder I. Nakaya, Gláucia Paranhos-Baccalà, Ana Tereza R. Vasconcelos, Ester Cerdeira Sabino

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Temporal and spatial analysis of over 7,000 measles cases outbreak from 2018 to 2019 in the Brazilian Amazon by Felipe de Mello Martins, Alessandra Pinheiro Vidal, Jeevan Giddaluru, Bernardo Maia da Silva, Eva K. Lee, Peijue Zhang, Lucas Esteves Cardozo, Carlos Augusto Prete Junior, Helves Humberto Domingues, Ester Cerdeira Sabino, Vanderson de Souza Sampaio, Wuelton Marcelo Monteiro, Helder I Nakaya

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Gene Signatures of Symptomatic and Asymptomatic Clinical-Immunological Profiles of Human Infection by <i>Leishmania</i> (<i>L.</i>) <i>chagasi</i> in Amazonian Brazil by Vania Lucia R. da Matta, André N. Gonçalves, Cláudia Maria C. Gomes, Islam H. Chouman, Frederico M. Ferreira, Marliane B. Campos, Luciana V. Lima, Thiago Vasconcelos dos Santos, Patrícia Karla Ramos, Rodrigo R. Furtado, Marcia D. Laurenti, Carlos Eduardo P. Corbett, Helder I. Nakaya, Fernando T. Silveira

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