Analyzing the genomic variation of microbial cell factories in the era of “New Biotechnology” by Markus Herrgård, Gianni Panagiotou

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ANALYZING THE GENOMIC VARIATION OF MICROBIAL CELL FACTORIES IN THE ERA OF “NEW BIOTECHNOLOGY” by Markus Herrgård, Gianni Panagiotou

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Co-evolution of strain design methods based on flux balance and elementary mode analysis by Daniel Machado, Markus J. Herrgård

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Stoichiometric Representation of Gene-Protein-Reaction Associations Leverages Constraint-Based Analysis from Reaction to Gene-Level Phenotype Prediction. by Daniel Machado, Markus J Herrgård, Isabel Rocha

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Identification of genome-scale metabolic network models using experimentally measured flux profiles. by Markus J Herrgård, Stephen S Fong, Bernhard Ø Palsson

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Leveraging high-resolution omics data for predicting responses and adverse events to immune checkpoint inhibitors by Angelo Limeta, Francesco Gatto, Markus J. Herrgård, Boyang Ji, Jens Nielsen

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Current challenges in modeling cellular metabolism by Daniel eMachado, Kai Hua Zhuang, Nikolaus eSonnenschein, Markus J Herrgard

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OptCouple: Joint simulation of gene knockouts, insertions and medium modifications for prediction of growth-coupled strain designs by Kristian Jensen, Valentijn Broeken, Anne Sofie Lærke Hansen, Nikolaus Sonnenschein, Markus J. Herrgård

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Analysis of genetic variation and potential applications in genome-scale metabolic modeling by João Gonçalo Rocha Cardoso, Mikael Rørdam eAndersen, Markus J Herrgard, Nikolaus eSonnenschein

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Integration of enzymatic data in Bacillus subtilis genome-scale metabolic model improves phenotype predictions and enables in silico design of poly-γ-glutamic acid production strai... by Ilaria Massaiu, Lorenzo Pasotti, Nikolaus Sonnenschein, Erlinda Rama, Matteo Cavaletti, Paolo Magni, Cinzia Calvio, Markus J. Herrgård

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Generation of a platform strain for ionic liquid tolerance using adaptive laboratory evolution by Elsayed T. Mohamed, Shizeng Wang, Rebecca M. Lennen, Markus J. Herrgård, Blake A. Simmons, Steven W. Singer, Adam M. Feist

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Generation of an E. coli platform strain for improved sucrose utilization using adaptive laboratory evolution by Elsayed T. Mohamed, Hemanshu Mundhada, Jenny Landberg, Isaac Cann, Roderick I. Mackie, Alex Toftgaard Nielsen, Markus J. Herrgård, Adam M. Feist

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A Genome-Scale Metabolic Model for Methylococcus capsulatus (Bath) Suggests Reduced Efficiency Electron Transfer to the Particulate Methane Monooxygenase by Christian Lieven, Leander A. H. Petersen, Leander A. H. Petersen, Sten Bay Jørgensen, Krist V. Gernaey, Markus J. Herrgard, Nikolaus Sonnenschein

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A metabolic reconstruction of Lactobacillus reuteri JCM 1112 and analysis of its potential as a cell factory by Thordis Kristjansdottir, Elleke F. Bosma, Filipe Branco dos Santos, Emre Özdemir, Markus J. Herrgård, Lucas França, Bruno Ferreira, Alex T. Nielsen, Steinn Gudmundsson

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EasyCloneMulti: A Set of Vectors for Simultaneous and Multiple Genomic Integrations in Saccharomyces cerevisiae. by Jérôme Maury, Susanne M Germann, Simo Abdessamad Baallal Jacobsen, Niels B Jensen, Kanchana R Kildegaard, Markus J Herrgård, Konstantin Schneider, Anna Koza, Jochen Forster, Jens Nielsen, Irina Borodina

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High-throughput kinase profiling: a more efficient approach toward the discovery of new kinase inhibitors. by Miduturu, C, Deng, X, Kwiatkowski, N, Yang, W, Brault, L, Filippakopoulos, P, Chung, E, Yang, Q, Schwaller, J, Knapp, S, King, R, Lee, J, Herrgard, S, Zarrinkar, P, Gray, N

Multi-Omics Analysis of Fatty Alcohol Production in Engineered Yeasts Saccharomyces cerevisiae and Yarrowia lipolytica by Jonathan Dahlin, Carina Holkenbrink, Eko Roy Marella, Guokun Wang, Ulf Liebal, Christian Lieven, Dieter Weber, Douglas McCloskey, Birgitta E. Ebert, Markus J. Herrgård, Lars Mathias Blank, Irina Borodina

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The governance structure for data access in the DIRECT consortium: an innovative medicines initiative (IMI) project by Teare, H, De Masi, F, Banasik, K, Barnett, A, Herrgard, S, Jablonka, B, Postma, J, McDonald, T, Forgie, I, Chmura, P, Rydzka, E, Gupta, R, Brunak, S, Pearson, E, Kaye, J

Phylogenetic and functional analysis of metagenome sequence from high-temperature archaeal habitats demonstrate linkages between metabolic potential and geochemistry by William P. Inskeep, Zackary J Jay, Markus J Herrgard, Mark A Kozubal, Douglas B Rusch, Susannah Green Tringe, Richard E Macur, Ryan edeM. Jennings, Eric S Boyd, John R. Spear, Francisco F Roberto

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Community Structure and Function of High-temperature Chlorophototrophic Microbial Mats Inhabiting Diverse Geothermal Environments by William P. Inskeep, Christian G. Klatt, Markus J Herrgard, Zackary J Jay, Douglas B Rusch, Susannah Green Tringe, M. Niki eParenteau, David M Ward, Sarah M Boomer, Donald A Bryant, Scott R Miller

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