Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens by Baker, S, Thomson, N, Weill, F-X, Holt, KE

Pathogen genomic surveillance of typhoidal Salmonella infection in adults and children reveals no association between clinical outcomes and infecting genotypes by Britto, CD, Mathias, S, Bosco, A, Dyson, ZA, Dougan, G, Raveendran, S, Abin, VL, Jose, S, Nagaraj, S, Holt, KE, Pollard, AJ

Laboratory and molecular surveillance of paediatric typhoidal Salmonella in Nepal: Antimicrobial resistance and implications for vaccine policy by Britto, CD, Dyson, ZA, Duchene, S, Carter, MJ, Gurung, M, Kelly, DF, Murdoch, DR, Ansari, I, Thorson, S, Shrestha, S, Adhikari, N, Dougan, G, Holt, KE, Pollard, AJ

Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei by Hawkey, J, Paranagama, K, Bengtsson, RJ, Weill, F-X, Thomson, NR, Baker, S, Cerdeira, L, Iqbal, Z, Hunt, M, Ingle, DJ, Dallman, TJ, Jenkins, C, Williamson, DA, Holt, KE

Typhoid fever by Meiring, JE, Khanam, F, Basnyat, B, Charles, RC, Crump, JA, Debellut, F, Holt, KE, Kariuki, S, Mugisha, E, Neuzil, KM, Parry, CM, Pitzer, VE, Pollard, AJ, Qadri, F, Gordon, MA

Direct inference and control of genetic population structure from RNA sequencing data by Fachrul, M, Karkey, A, Shakya, M, Judd, LM, Harshegyi, T, Sim, KS, Tonks, S, Dongol, S, Shrestha, R, Salim, A, Baker, S, Pollard, AJ, Khor, CC, Dolecek, C, Basnyat, B, Dunstan, SJ, Holt, KE, Inouye, M

Evaluating the relationship between ciprofloxacin prescription and non-susceptibility in Salmonella Typhi in Blantyre, Malawi: an observational study by Ashton, PM, Chunga Chirambo, A, Meiring, JE, Patel, PD, Mbewe, M, Silungwe, N, Chizani, K, Banda, H, Heyderman, RS, Dyson, ZA, MacPherson, P, Henrion, MYR, STRATAA Study Group, Holt, KE, Gordon, MA

A Bayesian approach for estimating typhoid fever incidence from large-scale facility-based passive surveillance data by Phillips, MT, Meiring, JE, Voysey, M, Warren, JL, Baker, S, Basnyat, B, Clemens, JD, Dolecek, C, Dunstan, SJ, Dougan, G, Gordon, MA, Thindwa, D, Heyderman, RS, Holt, KE, Qadri, F, Pollard, AJ, Pitzer, VE

A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch by Argimón, S, Yeats, CA, Goater, RJ, Abudahab, K, Taylor, B, Underwood, A, Sánchez-Busó, L, Wong, VK, Dyson, ZA, Nair, S, Park, SE, Marks, F, Page, AJ, Keane, JA, Baker, S, Holt, KE, Dougan, G, Aanensen, DM

Burden of enteric fever at three urban sites in Africa and Asia: a multicentre population-based study by Meiring, JE, Shakya, M, Khanam, F, Voysey, M, Phillips, MT, Tonks, S, Thindwa, D, Darton, TC, Dongol, S, Karkey, A, Zaman, K, Baker, S, Dolecek, C, Dunstan, SJ, Dougan, G, Holt, KE, Heyderman, RS, Qadri, F, Pitzer, VE, Basnyat, B, Gordon, MA, Clemens, J, Pollard, AJ

Evolution and transmission of antibiotic resistance is driven by Beijing lineage Mycobacterium tuberculosis in Vietnam by Silcocks, M, Chang, X, Thuong Thuong, NT, Qin, Y, Minh Ha, DT, Khac Thai, PV, Vijay, S, Anh Thu, DD, Ngoc Ha, VT, Ngoc Nhung, H, Huu Lan, N, Quynh Nhu, NT, Edwards, D, Nath, A, Pham, K, Duc Bang, N, Hong Chau, TT, Thwaites, G, Heemskerk, AD, Chuen Khor, C, Teo, YY, Inouye, M, Ong, RT-H, Caws, M, Holt, KE, Dunstan, SJ

The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa by Park, SE, Pham, DT, Boinett, C, Wong, VK, Pak, GD, Panzner, U, Espinoza, LMC, Von Kalckreuth, V, Im, J, Schütt-Gerowitt, H, Crump, JA, Breiman, RF, Adu-Sarkodie, Y, Owusu-Dabo, E, Rakotozandrindrainy, R, Soura, AB, Aseffa, A, Gasmelseed, N, Keddy, KH, May, J, Sow, AG, Aaby, P, Biggs, HM, Hertz, JT, Montgomery, JM, Cosmas, L, Olack, B, Fields, B, Sarpong, N, Razafindrabe, TJL, Raminosoa, TM, Kabore, LP, Sampo, E, Teferi, M, Yeshitela, B, Tayeb, MA, Sooka, A, Meyer, CG, Krumkamp, R, Dekker, DM, Jaeger, A, Poppert, S, Tall, A, Niang, A, Bjerregaard-Andersen, M, Løfberg, SV, Seo, HJ, Jeon, HJ, Deerin, JF, Park, J, Konings, F, Ali, M, Clemens, JD, Hughes, P, Sendagala, JN, Vudriko, T, Downing, R, Ikumapayi, UN, Mackenzie, GA, Obaro, S, Argimon, S, Aanensen, DM, Page, A, Keane, JA, Duchene, S, Dyson, Z, Holt, KE, Dougan, G, Marks, F, Baker, S