ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads by Hunt, M, Swann, J, Constantinides, B, Fowler, PW, Iqbal, Z

ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads by Hunt, M, Swann, J, Constantinides, B, Fowler, PW, Iqbal, Z

REAPR: a universal tool for genome assembly evaluation. by Hunt, M, Kikuchi, T, Sanders, M, Newbold, C, Berriman, M, Otto, T

Deactivation of vascular endothelium by monoclonal anti-tumor necrosis factor alpha antibody in rheumatoid arthritis. by Paleolog, E, Hunt, M, Elliott, M, Feldmann, M, Maini, R, Woody, J

Chronic stress in elderly carers of dementia patients and antibody response to influenza vaccination. by Vedhara, K, Cox, N, Wilcock, G, Perks, P, Hunt, M, Anderson, S, Lightman, S, Shanks, N

ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads by Hunt, M, Mather, AE, Sánchez-Busó, L, Page, AJ, Parkhill, J, Keane, JA, Harris, SR

Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs by Colquhoun, RM, Hall, MB, Lima, L, Roberts, LW, Malone, KM, Hunt, M, Letcher, B, Hawkey, J, George, S, Pankhurst, L, Iqbal, Z

Exploring Plasmodium falciparum var gene expression to assess host selection pressure on parasites during infancy by Kivisi, C, Muthui, M, Hunt, M, Fegan, G, Otto, T, Githinji, G, Warimwe, G, Rance, R, Marsh, K, Bull, P, Abdi, A

Enhancement of antibody responses to influenza vaccination in the elderly following a cognitive-behavioural stress management intervention. by Vedhara, K, Bennett, P, Clark, S, Lightman, S, Shaw, S, Perks, P, Hunt, M, Philip, J, Tallon, D, Murphy, P, Jones, R, Wilcock, G, Shanks, N

Muon-spin rotation studies of the flux lattice in kappa-(BEDT-TTF)(2)Cu(SCN)(2) by Lee, S, Blundell, S, Pratt, F, Pattenden, P, Forgan, E, Sasaki, T, Aegerter, C, Hunt, M, Chow, K, Hayes, W, Singleton, J, Keller, H, Savic, I

Genetic variation associated with infection and the environment in the accidental pathogen Burkholderia pseudomallei by Chewapreecha, C, Mather, AE, Harris, SR, Hunt, M, Holden, MTG, Chaichana, C, Wuthiekanun, V, Dougan, G, Day, NPJ, Limmathurotsakul, D, Parkhill, J, Peacock, SJ

Genetic variation associated with infection and the environment in the accidental pathogen Burkholderia pseudomallei by Chewapreecha, C, Mather, AE, Harris, SR, Hunt, M, Holden, MTG, Chaichana, C, Wuthiekanun, V, Dougan, G, Day, NPJ, Limmathurotsakul, D, Parkhill, J, Peacock, SJ

Bedaquiline and clofazimine resistance in Mycobacterium tuberculosis: an in-vitro and in-silico data analysis by Sonnenkalb, L, Carter, JJ, Spitaleri, A, Iqbal, Z, Hunt, M, Malone, KM, Utpatel, C, Cirillo, DM, Rodrigues, C, Nilgiriwala, KS, Fowler, PW, Merker, M, Niemann, S

Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei by Hawkey, J, Paranagama, K, Bengtsson, RJ, Weill, F-X, Thomson, NR, Baker, S, Cerdeira, L, Iqbal, Z, Hunt, M, Ingle, DJ, Dallman, TJ, Jenkins, C, Williamson, DA, Holt, KE

Caregiver stress, mortality and immunity by Glaser, R, Sheridan, J, Malarkey, W, MacCallum, R, Kiecolt-Glaser, J, Schulz, R, Beach, SR, Vedhara, K, Cox, N, Wilcock, G, Perks, P, Hunt, M, Anderson, S, Lightman, S, Shanks, N

Catalogue of mutations in Mycobacterium tuberculosis complex and their association with drug resistance by Rodwell, T, Miotto, P, Köser, C, Walker, T, Fowler, PW, Knaggs, J, Iqbal, Z, Hunt, M, Chindelevitch, L, Farhat, M, Cirillo, D, Crook, D, Comas, I, Posey, J, Vally Omar, S, Peto, T, Walker, A, Suresh, A, Uplekar, S, Laurent, S, Colman, R

Quantitative measurement of antibiotic resistance in Mycobacterium tuberculosis reveals genetic determinants of resistance and susceptibility in a target gene approach by Barilar, I, Battaglia, S, Borroni, E, Zankin, A, Clifton, D, Crook, D, Earle, S, Fowler, PW, Giberto Cruz, A, Hoosdally, S, Knaggs, J, Hunt, M, Kouchaki, S, Lachapelle, A, Peto, T, Rodger, G, Roohi, A, Thwaites, G, Walker, AS, Wilson, D, Yang, Y

Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms by Earle, SG, Wilson, DJ, Barilar, I, Battaglia, S, Cirillo, DM, Clifton, DA, Crook, DW, Fowler, PW, Grazian, C, Hunt, M, Iqbal, Z, Ismail, NA, Knaggs, J, Lachapelle, AS, Merker, M, Mistry, N, Moore, D, Niemann, S, Peto, TEA, Rodrigues, C, Thwaites, G, Walker, AS

Prediction of susceptibility to first-line tuberculosis drugs by DNA sequencing by Allix-Béguec, C, Arandjelovic, I, Bi, L, Clifton, D, Crook, D, Fowler, P, Gibertoni Cruz, A, Golubchik, T, Hoosdally, S, Hunt, M, Iqbal, Z, Lipworth, S, Peto, T, Thwaites, G, Walker, A, Walker, T, Wilson, D, Wyllie, D, Yang, Y, The CRyPTIC Consortium et al.

A phylogenetic and phenotypic analysis of Salmonella enterica serovar weltevreden, an emerging agent of diarrheal disease in tropical regions by Makendi, C, Page, A, Wren, B, Le Thi Phuong, T, Clare, S, Hale, C, Goulding, D, Klemm, E, Pickard, D, Okoro, C, Hunt, M, Thompson, C, Phu Huong Lan, N, Tran Do Hoang, N, Thwaites, G, Le Hello, S, Brisabois, A, Weill, F, Baker, S, Dougan, G