DivCom: A Tool for Systematic Partition of Groups of Microbial Profiles Into Intrinsic Subclusters and Distance-Based Subgroup Comparisons by Evangelia Intze , Ilias Lagkouvardos , Ilias Lagkouvardos 

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Taxonomy Informed Clustering, an Optimized Method for Purer and More Informative Clusters in Diversity Analysis and Microbiome Profiling by Antonios Kioukis, Mohsen Pourjam, Klaus Neuhaus, Ilias Lagkouvardos, Ilias Lagkouvardos

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Cronos: A Machine Learning Pipeline for Description and Predictive Modeling of Microbial Communities Over Time by Aristeidis Litos, Aristeidis Litos, Evangelia Intze, Pavlos Pavlidis, Ilias Lagkouvardos, Ilias Lagkouvardos

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Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons by Ilias Lagkouvardos, Sandra Fischer, Neeraj Kumar, Thomas Clavel

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Large-Scale Integration of Amplicon Data Reveals Massive Diversity within <i>Saprospirales</i>, Mostly Originating from Saline Environments by Rafaila Nikola Mourgela, Antonios Kioukis, Mohsen Pourjam, Ilias Lagkouvardos

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An Insight into Goat Cheese: The Tales of Artisanal and Industrial Gidotyri Microbiota by Aikaterini Nelli, Brigkita Venardou, Ioannis Skoufos, Chrysoula (Chrysa) Voidarou, Ilias Lagkouvardos, Athina Tzora

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Alteration of Intestinal Microbiome of <i>Clostridioides difficile-</i>Infected Hamsters during the Treatment with Specific Cow Antibodies by Hans-Jürgen Heidebrecht, Ilias Lagkouvardos, Sandra Reitmeier, Claudia Hengst, Ulrich Kulozik, Michael W. Pfaffl

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Persistent Dysbiosis, Parasite Rise and Growth Impairment in Aquacultured European Seabass after Oxytetracycline Treatment by Dimitris Rigas, Nikos Grivas, Aikaterini Nelli, Evangelia Gouva, Ioannis Skoufos, Konstantinos Kormas, Athina Tzora, Ilias Lagkouvardos

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The “Crosstalk” between Microbiota and Metabolomic Profile of Kefalograviera Cheese after the Innovative Feeding Strategy of Dairy Sheep by Omega-3 Fatty Acids by Athina Tzora, Aikaterini Nelli, Anastasia S. Kritikou, Danai Katsarou, Ilias Giannenas, Ilias Lagkouvardos, Nikolaos S. Thomaidis, Ioannis Skoufos

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Processing Matters in Nutrient-Matched Laboratory Diets for Mice—Microbiome by Jasmin Wenderlein, Linda F. Böswald, Sebastian Ulrich, Ellen Kienzle, Klaus Neuhaus, Ilias Lagkouvardos, Christian Zenner, Reinhard K. Straubinger

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A Novel Primer Mixture for GH48 Genes: Quantification and Identification of Truly Cellulolytic Bacteria in Biogas Fermenters by Regina Rettenmaier, Yat Kei Lo, Larissa Schmidt, Bernhard Munk, Ilias Lagkouvardos, Klaus Neuhaus, Wolfgang Schwarz, Wolfgang Liebl, Vladimir Zverlov

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The Development of the Bacterial Community of Brown Trout (<i>Salmo trutta</i>) during Ontogeny by Katharina Keiz, Sebastian Ulrich, Jasmin Wenderlein, Patrick Keferloher, Anna Wiesinger, Klaus Neuhaus, Ilias Lagkouvardos, Helmut Wedekind, Reinhard K. Straubinger

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An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome by Till R. Lesker, Abilash C. Durairaj, Eric J.C. Gálvez, Ilias Lagkouvardos, John F. Baines, Thomas Clavel, Alexander Sczyrba, Alice C. McHardy, Till Strowig

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Use of an Innovative Silage of Agro-Industrial Waste By-Products in Pig Nutrition: A Pilot Study of Its Effects on the Pig Gastrointestinal Microbiota by Ioannis Skoufos, Aikaterini Nelli, Brigkita Venardou, Ilias Lagkouvardos, Ilias Giannenas, Georgios Magklaras, Christos Zacharis, Lizhi Jin, Jin Wang, Evangelia Gouva, Stylianos Skoufos, Eleftherios Bonos, Athina Tzora

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Synbiotic-driven improvement of metabolic disturbances is associated with changes in the gut microbiome in diet-induced obese mice by Xinxin Ke, Alesia Walker, Sven-Bastiaan Haange, Ilias Lagkouvardos, Yuwen Liu, Philippe Schmitt-Kopplin, Martin von Bergen, Nico Jehmlich, Xin He, Thomas Clavel, Peter C.K. Cheung

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Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family by Ilias Lagkouvardos, Till R. Lesker, Thomas C. A. Hitch, Eric J. C. Gálvez, Nathiana Smit, Klaus Neuhaus, Jun Wang, John F. Baines, Birte Abt, Bärbel Stecher, Jörg Overmann, Till Strowig, Thomas Clavel

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Dietary fat and gut microbiota interactions determine diet-induced obesity in mice by Raphaela Kübeck, Catalina Bonet-Ripoll, Christina Hoffmann, Alesia Walker, Veronika Maria Müller, Valentina Luise Schüppel, Ilias Lagkouvardos, Birgit Scholz, Karl-Heinz Engel, Hannelore Daniel, Philippe Schmitt-Kopplin, Dirk Haller, Thomas Clavel, Martin Klingenspor

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Surface-Associated Lipoproteins Link Enterococcus faecalis Virulence to Colitogenic Activity in IL-10-Deficient Mice Independent of Their Expression Levels. by Soeren Ocvirk, Irina G Sava, Isabella Lengfelder, Ilias Lagkouvardos, Natalie Steck, Jung H Roh, Sandrine Tchaptchet, Yinyin Bao, Jonathan J Hansen, Johannes Huebner, Ian M Carroll, Barbara E Murray, R Balfour Sartor, Dirk Haller

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Darier’s disease exhibits a unique cutaneous microbial dysbiosis associated with inflammation and body malodour by Yacine Amar, Danielle Rogner, Rafaela L. Silva, Bärbel U. Foesel, Minhaz Ud-Dean, Ilias Lagkouvardos, Susanne A. Steimle-Grauer, Sebastian Niedermeier, Susanne Kublik, Manja Jargosch, Matthias Heinig, Jenny Thomas, Stefanie Eyerich, Jakob D. Wikström, Michael Schloter, Kilian Eyerich, Tilo Biedermann, Martin Köberle

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Correction: Darier’s disease exhibits a unique cutaneous microbial dysbiosis associated with inflammation and body malodour by Yacine Amar, Danielle Rogner, Rafaela L. Silva, Bärbel U. Foesel, Minhaz Ud‑Dean, Ilias Lagkouvardos, Susanne A. Steimle‑Grauer, Sebastian Niedermeier, Susanne Kublik, Manja Jargosch, Matthias Heinig, Jenny Thomas, Stefanie Eyerich, Jakob D. Wikström, Michael Schloter, Kilian Eyerich, Tilo Biedermann, Martin Köberle

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