A comparative recombination analysis of human coronaviruses and implications for the SARS-CoV-2 pandemic by Simon Pollett, Matthew A. Conte, Mark Sanborn, Richard G. Jarman, Grace M. Lidl, Kayvon Modjarrad, Irina Maljkovic Berry

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Intrahost SARS-CoV-2 k-mer Identification Method (iSKIM) for Rapid Detection of Mutations of Concern Reveals Emergence of Global Mutation Patterns by Ashley Thommana, Migun Shakya, Jaykumar Gandhi, Christian K. Fung, Patrick S. G. Chain, Irina Maljkovic Berry, Matthew A. Conte

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The origins of dengue and chikungunya viruses in Ecuador following increased migration from Venezuela and Colombia by Irina Maljkovic Berry, Wiriya Rutvisuttinunt, Rachel Sippy, Efrain Beltran-Ayala, Katherine Figueroa, Sadie Ryan, Abhinaya Srikanth, Anna M. Stewart-Ibarra, Timothy Endy, Richard G. Jarman

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Genomic surveillance of SARS-CoV-2 in US military compounds in Afghanistan reveals multiple introductions and outbreaks of Alpha and Delta variants by Irina Maljkovic Berry, Jun Hang, Christian Fung, Yu Yang, Marcus Chibucos, Adam Pollio, Jay Gandhi, Tao Li, Matthew A. Conte, Grace M. Lidl, Jay A. Johannigman, Heather Friberg

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Emergence of a novel chikungunya virus strain bearing the E1:V80A substitution, out of the Mombasa, Kenya 2017-2018 outbreak. by Fredrick Eyase, Solomon Langat, Irina Maljkovic Berry, Francis Mulwa, Albert Nyunja, James Mutisya, Samuel Owaka, Samson Limbaso, Victor Ofula, Hellen Koka, Edith Koskei, Joel Lutomiah, Richard G Jarman, Rosemary Sang

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A Phase 1 Two-Arm, Randomized, Double-Blind, Active-Controlled Study of Live, Oral Plasmid-Derived Adenovirus Type 4 and Type 7 Vaccines in Seronegative Adults by Shannon Beaty, Natalie Collins, Nicos Karasavvas, Robert Kuschner, Jun Hang, Anima Adhikari, Irina Maljkovic Berry, Christian Fung, Shannon Walls, Elena Betancourt, Jason Mendy, Michael Lock, Emma Gierman, Sean Bennett, Paul Shabram, Kelly Warfield

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Precision Tracing of Household Dengue Spread Using Inter- and Intra-Host Viral Variation Data, Kamphaeng Phet, Thailand by Irina Maljkovic Berry, Melanie C. Melendrez, Simon Pollett, Katherine Figueroa, Darunee Buddhari, Chonticha Klungthong, Ananda Nisalak, Michael Panciera, Butsaya Thaisomboonsuk, Tao Li, Tyghe G. Vallard, Louis Macareo, In-Kyu Yoon, Stephen J. Thomas, Timothy Endy, Richard G. Jarman

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A Department of Defense Laboratory Consortium Approach to Next Generation Sequencing and Bioinformatics Training for Infectious Disease Surveillance in Kenya by Irina Maljkovic Berry, Wiriya Rutvisuttinunt, Wiriya Rutvisuttinunt, Logan J. Voegtly, Logan J. Voegtly, Karla Prieto, Karla Prieto, Simon Pollett, Regina Z. Cer, Regina Z. Cer, Jeffrey R. Kugelman, Kimberly A. Bishop-Lilly, Lindsay Morton, John Waitumbi, Richard G. Jarman

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Human Adenovirus Type 55 Distribution, Regional Persistence, and Genetic Variability by Jun Hang, Adriana E. Kajon, Paul C. F. Graf, Irina Maljkovic Berry, Yu Yang, Mark A. Sanborn, Christian K. Fung, Anima Adhikari, Melinda S. Balansay-Ames, Christopher A. Myers, Leonard N. Binn, Richard G. Jarman, Robert A. Kuschner, Natalie D. Collins

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Identification and evaluation of epidemic prediction and forecasting reporting guidelines: A systematic review and a call for action by Simon Pollett, Michael Johansson, Matthew Biggerstaff, Lindsay C. Morton, Sara L. Bazaco, David M. Brett Major, Anna M. Stewart-Ibarra, Julie A. Pavlin, Suzanne Mate, Rachel Sippy, Laurie J. Hartman, Nicholas G. Reich, Irina Maljkovic Berry, Jean-Paul Chretien, Benjamin M. Althouse, Diane Myer, Cecile Viboud, Caitlin Rivers

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Investigation of an outbreak of COVID-19 among U.S. military personnel and beneficiaries stationed in the Republic of Korea, June-July 2021. by Shilpa Hakre, Evelyn Y Lam, Irina Maljkovic-Berry, Jun Hang, Luis A Pow Sang, Elizabeth J Bianchi, Christian Fung, Jay Gandhi, Marcus Chibucos, Matthew A Conte, Adam R Pollio, Christine A Mariskanish, Luke A Mansfield, Kayvon Modjarrad, Heather L Friberg-Robertson, Grace M Lidl, Paul T Scott, Douglas A Lougee

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Investigation of an outbreak of COVID-19 among U.S. military personnel and beneficiaries stationed in the Republic of Korea, June-July 2021 by Shilpa Hakre, Evelyn Y. Lam, Irina Maljkovic-Berry, Jun Hang, Luis A. Pow Sang, Elizabeth J. Bianchi, Christian Fung, Jay Gandhi, Marcus Chibucos, Matthew A. Conte, Adam R. Pollio, Christine A. Mariskanish, Luke A. Mansfield, Kayvon Modjarrad, Heather L. Friberg-Robertson, Grace M. Lidl, Paul T. Scott, Douglas A. Lougee

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Beneath the surface: Amino acid variation underlying two decades of dengue virus antigenic dynamics in Bangkok, Thailand. by Angkana T Huang, Henrik Salje, Ana Coello Escoto, Nayeem Chowdhury, Christian Chávez, Bernardo Garcia-Carreras, Wiriya Rutvisuttinunt, Irina Maljkovic Berry, Gregory D Gromowski, Lin Wang, Chonticha Klungthong, Butsaya Thaisomboonsuk, Ananda Nisalak, Luke M Trimmer-Smith, Isabel Rodriguez-Barraquer, Damon W Ellison, Anthony R Jones, Stefan Fernandez, Stephen J Thomas, Derek J Smith, Richard Jarman, Stephen S Whitehead, Derek A T Cummings, Leah C Katzelnick

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Correction: Recommended reporting items for epidemic forecasting and prediction research: The EPIFORGE 2020 guidelines. by Simon Pollett, Michael A Johansson, Nicholas G Reich, David Brett-Major, Sara Y Del Valle, Srinivasan Venkatramanan, Rachel Lowe, Travis Porco, Irina Maljkovic Berry, Alina Deshpande, Moritz U G Kraemer, David L Blazes, Wirichada Pan-Ngum, Alessandro Vespigiani, Suzanne E Mate, Sheetal P Silal, Sasikiran Kandula, Rachel Sippy, Talia M Quandelacy, Jeffrey J Morgan, Jacob Ball, Lindsay C Morton, Benjamin M Althouse, Julie Pavlin, Wilbert van Panhuis, Steven Riley, Matthew Biggerstaff, Cecile Viboud, Oliver Brady, Caitlin Rivers

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Recommended reporting items for epidemic forecasting and prediction research: The EPIFORGE 2020 guidelines. by Simon Pollett, Michael A Johansson, Nicholas G Reich, David Brett-Major, Sara Y Del Valle, Srinivasan Venkatramanan, Rachel Lowe, Travis Porco, Irina Maljkovic Berry, Alina Deshpande, Moritz U G Kraemer, David L Blazes, Wirichada Pan-Ngum, Alessandro Vespigiani, Suzanne E Mate, Sheetal P Silal, Sasikiran Kandula, Rachel Sippy, Talia M Quandelacy, Jeffrey J Morgan, Jacob Ball, Lindsay C Morton, Benjamin M Althouse, Julie Pavlin, Wilbert van Panhuis, Steven Riley, Matthew Biggerstaff, Cecile Viboud, Oliver Brady, Caitlin Rivers

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