Real-time public health communication of local SARS-CoV-2 genomic epidemiology. by Chaney C Kalinich, Cole G Jensen, Peter Neugebauer, Mary E Petrone, Mario Peña-Hernández, Isabel M Ott, Anne L Wyllie, Tara Alpert, Chantal B F Vogels, Joseph R Fauver, Nathan D Grubaugh, Anderson F Brito

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Viral dynamics of acute SARS-CoV-2 infection and applications to diagnostic and public health strategies. by Stephen M Kissler, Joseph R Fauver, Christina Mack, Scott W Olesen, Caroline Tai, Kristin Y Shiue, Chaney C Kalinich, Sarah Jednak, Isabel M Ott, Chantal B F Vogels, Jay Wohlgemuth, James Weisberger, John DiFiori, Deverick J Anderson, Jimmie Mancell, David D Ho, Nathan D Grubaugh, Yonatan H Grad

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Stability of SARS-CoV-2 RNA in Nonsupplemented Saliva by Isabel M. Ott, Madison S. Strine, Anne E. Watkins, Maikel Boot, Chaney C. Kalinich, Christina A. Harden, Chantal B.F. Vogels, Arnau Casanovas-Massana, Adam J. Moore, M. Catherine Muenker, Maura Nakahata, Maria Tokuyama, Allison Nelson, John Fournier, Santos Bermejo, Melissa Campbell, Rupak Datta, Charles S. Dela Cruz, Shelli F. Farhadian, Albert I. Ko, Akiko Iwasaki, Nathan D. Grubaugh, Craig B. Wilen, Anne L. Wyllie

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DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus by Chantal B. F. Vogels, Verity Hill, Mallery I. Breban, Chrispin Chaguza, Lauren M. Paul, Afeez Sodeinde, Emma Taylor-Salmon, Isabel M. Ott, Mary E. Petrone, Dennis Dijk, Marcel Jonges, Matthijs R. A. Welkers, Timothy Locksmith, Yibo Dong, Namratha Tarigopula, Omer Tekin, Sarah Schmedes, Sylvia Bunch, Natalia Cano, Rayah Jaber, Charles Panzera, Ian Stryker, Julieta Vergara, Rebecca Zimler, Edgar Kopp, Lea Heberlein, Kaylee S. Herzog, Joseph R. Fauver, Andrea M. Morrison, Scott F. Michael, Nathan D. Grubaugh

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Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques by Jasmijn A. Baaijens, Alessandro Zulli, Isabel M. Ott, Ioanna Nika, Mart J. van der Lugt, Mary E. Petrone, Tara Alpert, Joseph R. Fauver, Chaney C. Kalinich, Chantal B. F. Vogels, Mallery I. Breban, Claire Duvallet, Kyle A. McElroy, Newsha Ghaeli, Maxim Imakaev, Malaika F. Mckenzie-Bennett, Keith Robison, Alex Plocik, Rebecca Schilling, Martha Pierson, Rebecca Littlefield, Michelle L. Spencer, Birgitte B. Simen, Yale SARS-CoV-2 Genomic Surveillance Initiative, William P. Hanage, Nathan D. Grubaugh, Jordan Peccia, Michael Baym

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Combining genomic and epidemiological data to compare the transmissibility of SARS-CoV-2 variants Alpha and Iota by Mary E. Petrone, Jessica E. Rothman, Mallery I. Breban, Isabel M. Ott, Alexis Russell, Erica Lasek-Nesselquist, Hamada Badr, Kevin Kelly, Greg Omerza, Nicholas Renzette, Anne E. Watkins, Chaney C. Kalinich, Tara Alpert, Anderson F. Brito, Rebecca Earnest, Irina R. Tikhonova, Christopher Castaldi, John P. Kelly, Matthew Shudt, Jonathan Plitnick, Erasmus Schneider, Steven Murphy, Caleb Neal, Eva Laszlo, Ahmad Altajar, Claire Pearson, Anthony Muyombwe, Randy Downing, Jafar Razeq, Linda Niccolai, Madeline S. Wilson, Margaret L. Anderson, Jianhui Wang, Chen Liu, Pei Hui, Shrikant Mane, Bradford P. Taylor, William P. Hanage, Marie L. Landry, David R. Peaper, Kaya Bilguvar, Joseph R. Fauver, Chantal B. F. Vogels, Lauren M. Gardner, Virginia E. Pitzer, Kirsten St. George, Mark D. Adams, Nathan D. Grubaugh

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Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2. by Chantal B F Vogels, Mallery I Breban, Isabel M Ott, Tara Alpert, Mary E Petrone, Anne E Watkins, Chaney C Kalinich, Rebecca Earnest, Jessica E Rothman, Jaqueline Goes de Jesus, Ingra Morales Claro, Giulia Magalhães Ferreira, Myuki A E Crispim, Brazil-UK CADDE Genomic Network, Lavanya Singh, Houriiyah Tegally, Ugochukwu J Anyaneji, Network for Genomic Surveillance in South Africa, Emma B Hodcroft, Christopher E Mason, Gaurav Khullar, Jessica Metti, Joel T Dudley, Matthew J MacKay, Megan Nash, Jianhui Wang, Chen Liu, Pei Hui, Steven Murphy, Caleb Neal, Eva Laszlo, Marie L Landry, Anthony Muyombwe, Randy Downing, Jafar Razeq, Tulio de Oliveira, Nuno R Faria, Ester C Sabino, Richard A Neher, Joseph R Fauver, Nathan D Grubaugh

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