HIV-1 Transcription and Latency in the Spotlight by Iván D’Orso

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CIPHER: a flexible and extensive workflow platform for integrative next-generation sequencing data analysis and genomic regulatory element prediction by Carlos Guzman, Iván D’Orso

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HIV-1 Tat: Its Dependence on Host Factors is Crystal Clear by Alan D. Frankel, Iván D’Orso

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Mathematical Models of HIV-1 Dynamics, Transcription, and Latency by Iván D’Orso, Christian V. Forst

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KAP1/TRIM28: Transcriptional Activator and/or Repressor of Viral and Cellular Programs? by Keyera Randolph, Usman Hyder, Iván D’Orso

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HIV-1 Proviral Transcription and Latency in the New Era by Ashutosh Shukla, Nora-Guadalupe P. Ramirez, Iván D’Orso

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HIV-1 Proviral Genome Engineering with CRISPR-Cas9 for Mechanistic Studies by Usman Hyder, Ashutosh Shukla, Ashwini Challa, Iván D’Orso

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Functional Analysis of KAP1/TRIM28 Requirements for HIV-1 Transcription Activation by Keyera Randolph, Usman Hyder, Ashwini Challa, Erick Perez, Iván D’Orso

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Decoding Human Genome Regulatory Features That Influence HIV-1 Proviral Expression and Fate Through an Integrated Genomics Approach by Holly Ruess, Jeon Lee, Carlos Guzman, Venkat S Malladi, Iván D’Orso

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Genome-wide analysis of KAP1, the 7SK snRNP complex, and RNA polymerase II by Ryan P. McNamara, Carlos Guzman, Jonathan E. Reeder, Iván D'Orso

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Transcription Factors Mediate the Enzymatic Disassembly of Promoter-Bound 7SK snRNP to Locally Recruit P-TEFb for Transcription Elongation by Ryan P. McNamara, Jennifer L. McCann, Swapna Aravind Gudipaty, Iván D’Orso

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HIV Tat controls RNA Polymerase II and the epigenetic landscape to transcriptionally reprogram target immune cells by Jonathan E Reeder, Youn-Tae Kwak, Ryan P McNamara, Christian V Forst, Iván D'Orso

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Transcriptional Circuit Fragility Influences HIV Proviral Fate by Emily L. Morton, Christian V. Forst, Yue Zheng, Ana B. DePaula-Silva, Nora-Guadalupe P. Ramirez, Vicente Planelles, Iván D’Orso

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Cleavage and Polyadenylation Specificity Factor 6 Is Required for Efficient HIV-1 Latency Reversal by Yue Zheng, Heidi L. Schubert, Parmit K. Singh, Laura J. Martins, Alan N. Engelman, Iván D’Orso, Christopher P. Hill, Vicente Planelles

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The PNUTS-PP1 complex acts as an intrinsic barrier to herpesvirus KSHV gene expression and replication by Anne M. Devlin, Ashutosh Shukla, Julio C. Ruiz, Spencer D. Barnes, Ashwin Govindan, Olga V. Hunter, Anna M. Scarborough, Iván D’Orso, Nicholas K. Conrad

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The HIV-1 Tat protein recruits a ubiquitin ligase to reorganize the 7SK snRNP for transcriptional activation by Tyler B Faust, Yang Li, Curtis W Bacon, Gwendolyn M Jang, Amit Weiss, Bhargavi Jayaraman, Billy W Newton, Nevan J Krogan, Iván D'Orso, Alan D Frankel

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Host Cell Redox Alterations Promote Latent HIV-1 Reactivation through Atypical Transcription Factor Cooperativity by Emily Cruz-Lorenzo, Nora-Guadalupe P. Ramirez, Jeon Lee, Sonali Pandhe, Lei Wang, Juan Hernandez-Doria, Adam M. Spivak, Vicente Planelles, Tianna Petersen, Mamta K. Jain, Elisabeth D. Martinez, Iván D’Orso

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Host cell factors in HIV replication: meta-analysis of genome-wide studies. by Frederic D Bushman, Nirav Malani, Jason Fernandes, Iván D'Orso, Gerard Cagney, Tracy L Diamond, Honglin Zhou, Daria J Hazuda, Amy S Espeseth, Renate König, Sourav Bandyopadhyay, Trey Ideker, Stephen P Goff, Nevan J Krogan, Alan D Frankel, John A T Young, Sumit K Chanda

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