Host-associated and free-living phage communities differ profoundly in phylogenetic composition. by J Gregory Caporaso, Rob Knight, Scott T Kelley

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The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes by Jason W. Sahl, J. Gregory Caporaso, David A. Rasko, Paul Keim

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Correction: The Ecology of Microbial Communities Associated with. by Vanessa K. Michelou, J. Gregory Caporaso, Rob Knight, Stephen R. Palumbi

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cual-id: Globally Unique, Correctable, and Human-Friendly Sample Identifiers for Comparative Omics Studies by John H. Chase, Evan Bolyen, Jai Ram Rideout, J. Gregory Caporaso

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Phylogenetic farming: Can evolutionary history predict crop rotation via the soil microbiome? by Ian Kaplan, Nicholas A. Bokulich, J. Gregory Caporaso, Laramy S. Enders, Wadih Ghanem, Kathryn S. Ingerslew

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Rapidly Processed Stool Swabs Approximate Stool Microbiota Profiles by Nicholas A. Bokulich, Juan Maldonado, Dae-Wook Kang, Rosa Krajmalnik-Brown, J. Gregory Caporaso

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Altered Faecal Microbiota Composition and Structure of Ghanaian Children with Acute Gastroenteritis by Emmanuel Kofi Quaye, Raymond Lovelace Adjei, Abiola Isawumi, David J. Allen, J. Gregory Caporaso, Osbourne Quaye

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Species abundance information improves sequence taxonomy classification accuracy by Benjamin D. Kaehler, Nicholas A. Bokulich, Daniel McDonald, Rob Knight, J. Gregory Caporaso, Gavin A. Huttley

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Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity by Ashley Shade, Stuart E. Jones, J. Gregory Caporaso, Jo Handelsman, Rob Knight, Noah Fierer, Jack A. Gilbert

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Multi-omics data integration reveals metabolome as the top predictor of the cervicovaginal microenvironment. by Nicholas A Bokulich, Paweł Łaniewski, Anja Adamov, Dana M Chase, J Gregory Caporaso, Melissa M Herbst-Kralovetz

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Bacterial diversity in two Neonatal Intensive Care Units (NICUs). by Krissi M Hewitt, Frank L Mannino, Antonio Gonzalez, John H Chase, J Gregory Caporaso, Rob Knight, Scott T Kelley

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Facilitating bioinformatics reproducibility with QIIME 2 Provenance Replay. by Christopher R Keefe, Matthew R Dillon, Elizabeth Gehret, Chloe Herman, Mary Jewell, Colin V Wood, Evan Bolyen, J Gregory Caporaso

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q2-longitudinal: Longitudinal and Paired-Sample Analyses of Microbiome Data by Nicholas A. Bokulich, Matthew R. Dillon, Yilong Zhang, Jai Ram Rideout, Evan Bolyen, Huilin Li, Paul S. Albert, J. Gregory Caporaso

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Impact of Different Exercise Modalities on the Human Gut Microbiome by Dierdra Bycura, Anthony C. Santos, Arron Shiffer, Shari Kyman, Kyle Winfree, Jay Sutliffe, Talima Pearson, Derek Sonderegger, Emily Cope, J. Gregory Caporaso

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Designing Inclusive HPV Cancer Vaccines and Increasing Uptake among Native Americans—A Cultural Perspective Review by Skyler J. Bordeaux, Anthony W. Baca, Rene L. Begay, Francine C. Gachupin, J. Gregory Caporaso, Melissa M. Herbst-Kralovetz, Naomi R. Lee

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Multi-omics Analysis of Periodontal Pocket Microbial Communities Pre- and Posttreatment by Katy J. Califf, Karen Schwarzberg-Lipson, Neha Garg, Sean M. Gibbons, J. Gregory Caporaso, Jørgen Slots, Chloe Cohen, Pieter C. Dorrestein, Scott T. Kelley

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Open-Source Sequence Clustering Methods Improve the State Of the Art by Evguenia Kopylova, Jose A. Navas-Molina, Céline Mercier, Zhenjiang Zech Xu, Frédéric Mahé, Yan He, Hong-Wei Zhou, Torbjørn Rognes, J. Gregory Caporaso, Rob Knight

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The personal human oral microbiome obscures the effects of treatment on periodontal disease. by Karen Schwarzberg, Rosalin Le, Balambal Bharti, Suzanne Lindsay, Giorgio Casaburi, Francesco Salvatore, Mohamed H Saber, Faisal Alonaizan, Jørgen Slots, Roberta A Gottlieb, J Gregory Caporaso, Scott T Kelley

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mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking by Nicholas A. Bokulich, Jai Ram Rideout, William G. Mercurio, Arron Shiffer, Benjamin Wolfe, Corinne F. Maurice, Rachel J. Dutton, Peter J. Turnbaugh, Rob Knight, J. Gregory Caporaso

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Significant Impacts of Increasing Aridity on the Arid Soil Microbiome by Julia W. Neilson, Katy Califf, Cesar Cardona, Audrey Copeland, Will van Treuren, Karen L. Josephson, Rob Knight, Jack A. Gilbert, Jay Quade, J. Gregory Caporaso, Raina M. Maier

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