Joint inference of exclusivity patterns and recurrent trajectories from tumor mutation trees by Xiang Ge Luo, Jack Kuipers, Niko Beerenwinkel

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Efficient semiclassical approach for time delays by Jack Kuipers, Dmitry V Savin, Martin Sieber

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Bayesian Structure Learning and Sampling of Bayesian Networks with the R Package BiDAG by Polina Suter, Jack Kuipers, Giusi Moffa, Niko Beerenwinkel

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Single-cell mutation identification via phylogenetic inference by Jochen Singer, Jack Kuipers, Katharina Jahn, Niko Beerenwinkel

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COMPASS: joint copy number and mutation phylogeny reconstruction from amplicon single-cell sequencing data by Etienne Sollier, Jack Kuipers, Koichi Takahashi, Niko Beerenwinkel, Katharina Jahn

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Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data by Salem Malikic, Katharina Jahn, Jack Kuipers, S. Cenk Sahinalp, Niko Beerenwinkel

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Computational Model Reveals a Stochastic Mechanism behind Germinal Center Clonal Bursts by Aurélien Pélissier, Youcef Akrout, Katharina Jahn , Jack Kuipers , Ulf Klein , Niko Beerenwinkel, María Rodríguez Martínez 

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Multi-omics subtyping of hepatocellular carcinoma patients using a Bayesian network mixture model. by Polina Suter, Eva Dazert, Jack Kuipers, Charlotte K Y Ng, Tuyana Boldanova, Michael N Hall, Markus H Heim, Niko Beerenwinkel

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Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C. by Susana Posada-Céspedes, Gert Van Zyl, Hesam Montazeri, Jack Kuipers, Soo-Yon Rhee, Roger Kouyos, Huldrych F Günthard, Niko Beerenwinkel

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Spatial Distribution of Private Gene Mutations in Clear Cell Renal Cell Carcinoma by Ariane L. Moore, Aashil A. Batavia, Jack Kuipers, Jochen Singer, Elodie Burcklen, Peter Schraml, Christian Beisel, Holger Moch, Niko Beerenwinkel

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SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data by Senbai Kang, Nico Borgsmüller, Monica Valecha, Jack Kuipers, Joao M. Alves, Sonia Prado-López, Débora Chantada, Niko Beerenwinkel, David Posada, Ewa Szczurek

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scAmpi-A versatile pipeline for single-cell RNA-seq analysis from basics to clinics. by Anne Bertolini, Michael Prummer, Mustafa Anil Tuncel, Ulrike Menzel, María Lourdes Rosano-González, Jack Kuipers, Daniel Johannes Stekhoven, Tumor Profiler consortium, Niko Beerenwinkel, Franziska Singer

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Author Correction: Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics by Kiyomi Morita, Feng Wang, Katharina Jahn, Tianyuan Hu, Tomoyuki Tanaka, Yuya Sasaki, Jack Kuipers, Sanam Loghavi, Sa A. Wang, Yuanqing Yan, Ken Furudate, Jairo Matthews, Latasha Little, Curtis Gumbs, Jianhua Zhang, Xingzhi Song, Erika Thompson, Keyur P. Patel, Carlos E. Bueso-Ramos, Courtney D. DiNardo, Farhad Ravandi, Elias Jabbour, Michael Andreeff, Jorge Cortes, Kapil Bhalla, Guillermo Garcia-Manero, Hagop Kantarjian, Marina Konopleva, Daisuke Nakada, Nicholas Navin, Niko Beerenwinkel, P. Andrew Futreal, Koichi Takahashi

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Publisher Correction: Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics by Kiyomi Morita, Feng Wang, Katharina Jahn, Tianyuan Hu, Tomoyuki Tanaka, Yuya Sasaki, Jack Kuipers, Sanam Loghavi, Sa A. Wang, Yuanqing Yan, Ken Furudate, Jairo Matthews, Latasha Little, Curtis Gumbs, Jianhua Zhang, Xingzhi Song, Erika Thompson, Keyur P. Patel, Carlos E. Bueso-Ramos, Courtney D. DiNardo, Farhad Ravandi, Elias Jabbour, Michael Andreeff, Jorge Cortes, Kapil Bhalla, Guillermo Garcia-Manero, Hagop Kantarjian, Marina Konopleva, Daisuke Nakada, Nicholas Navin, Niko Beerenwinkel, P. Andrew Futreal, Koichi Takahashi

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