Evolutionary Divergence in DNA Damage Responses among Fungi by Jacob L. Steenwyk

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The dawn of relaxed phylogenetics. by Jacob L Steenwyk, Antonis Rokas

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orthofisher: a broadly applicable tool for automated gene identification and retrieval by Jacob L Steenwyk, Antonis Rokas

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Copy Number Variation in Fungi and Its Implications for Wine Yeast Genetic Diversity and Adaptation by Jacob L. Steenwyk, Antonis Rokas

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Treehouse: a user-friendly application to obtain subtrees from large phylogenies by Jacob L. Steenwyk, Antonis Rokas

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Know the enemy and know yourself: Addressing cryptic fungal pathogens of humans and beyond. by Jacob L Steenwyk, Antonis Rokas, Gustavo H Goldman

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Extensive Non-Coding Sequence Divergence Between the Major Human Pathogen Aspergillus fumigatus and its Relatives by Alec Brown, Alec Brown, Matthew E. Mead, Matthew E. Mead, Jacob L. Steenwyk, Jacob L. Steenwyk, Gustavo H. Goldman, Antonis Rokas, Antonis Rokas

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Resistance-Guided Mining of Bacterial Genotoxins Defines a Family of DNA Glycosylases by Noah P. Bradley, Katherine L. Wahl, Jacob L. Steenwyk, Antonis Rokas, Brandt F. Eichman

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Evolving moldy murderers: Aspergillus section Fumigati as a model for studying the repeated evolution of fungal pathogenicity. by Antonis Rokas, Matthew E Mead, Jacob L Steenwyk, Nicholas H Oberlies, Gustavo H Goldman

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A Robust Phylogenomic Time Tree for Biotechnologically and Medically Important Fungi in the Genera <italic toggle="yes">Aspergillus</italic> and <italic toggle="yes">Penicillium</i... by Jacob L. Steenwyk, Xing-Xing Shen, Abigail L. Lind, Gustavo H. Goldman, Antonis Rokas

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Correction: Variation and selection on codon usage bias across an entire subphylum. by Abigail L LaBella, Dana A Opulente, Jacob L Steenwyk, Chris Todd Hittinger, Antonis Rokas

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Variation and selection on codon usage bias across an entire subphylum. by Abigail L LaBella, Dana A Opulente, Jacob L Steenwyk, Chris Todd Hittinger, Antonis Rokas

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OrthoSNAP: A tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees. by Jacob L Steenwyk, Dayna C Goltz, Thomas J Buida, Yuanning Li, Xing-Xing Shen, Antonis Rokas

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integRATE: a desirability-based data integration framework for the prioritization of candidate genes across heterogeneous omics and its application to preterm birth by Haley R. Eidem, Jacob L. Steenwyk, Jennifer H. Wisecaver, John A. Capra, Patrick Abbot, Antonis Rokas

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Gliotoxin, a Known Virulence Factor in the Major Human Pathogen <named-content content-type="genus-species">Aspergillus fumigatus</named-content>, Is Also Biosynthesized by Its Non... by Sonja L. Knowles, Matthew E. Mead, Lilian Pereira Silva, Huzefa A. Raja, Jacob L. Steenwyk, Gustavo H. Goldman, Nicholas H. Oberlies, Antonis Rokas

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Rapid Phenotypic and Metabolomic Domestication of Wild <italic toggle="yes">Penicillium</italic> Molds on Cheese by Ina Bodinaku, Jason Shaffer, Allison B. Connors, Jacob L. Steenwyk, Megan N. Biango-Daniels, Erik K. Kastman, Antonis Rokas, Albert Robbat, Benjamin E. Wolfe

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CryptoCEN: A Co-Expression Network for Cryptococcus neoformans reveals novel proteins involved in DNA damage repair. by Matthew J O'Meara, Jackson R Rapala, Connie B Nichols, A Christina Alexandre, R Blake Billmyre, Jacob L Steenwyk, J Andrew Alspaugh, Teresa R O'Meara

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Gene Essentiality Analyzed by <italic toggle="yes">In Vivo</italic> Transposon Mutagenesis and Machine Learning in a Stable Haploid Isolate of <italic toggle="yes">Candida albicans... by Ella Shtifman Segal, Vladimir Gritsenko, Anton Levitan, Bhawna Yadav, Naama Dror, Jacob L. Steenwyk, Yael Silberberg, Kevin Mielich, Antonis Rokas, Neil A. R. Gow, Reinhard Kunze, Roded Sharan, Judith Berman

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Examination of Genome-Wide Ortholog Variation in Clinical and Environmental Isolates of the Fungal Pathogen Aspergillus fumigatus by Maria Augusta C. Horta, Jacob L. Steenwyk, Matthew E. Mead, Luciano H. Braz dos Santos, Shu Zhao, John G. Gibbons, Marina Marcet-Houben, Toni Gabaldón, Antonis Rokas, Gustavo H. Goldman

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Genomic and Phenotypic Heterogeneity of Clinical Isolates of the Human Pathogens Aspergillus fumigatus, Aspergillus lentulus, and Aspergillus fumigatiaffinis by Renato A. C. dos Santos, Renato A. C. dos Santos, Jacob L. Steenwyk, Olga Rivero-Menendez, Matthew E. Mead, Lilian P. Silva, Rafael W. Bastos, Ana Alastruey-Izquierdo, Gustavo H. Goldman, Antonis Rokas

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