Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications [version 1; referees: 2 approved] by Keith A. Jolley, James E. Bray, Martin C. J. Maiden

Get full text

Distribution of class 1 integrons in historic and contemporary collections of human pathogenic Escherichia coli. by Susanne Sütterlin, James E Bray, Martin C J Maiden, Eva Tano

Get full text

Genomic Analysis of the Evolution and Global Spread of Hyper-invasive Meningococcal Lineage 5 by Odile B. Harrison, James E. Bray, Martin C.J. Maiden, Dominique A. Caugant

Get full text

A Point Prevalence Survey of Antibiotic Resistance in the Irish Environment, 2018–2019 by Brigid Hooban, Kelly Fitzhenry, Niamh Cahill, Aoife Joyce, Louise O' Connor, James E. Bray, Sylvain Brisse, Virginie Passet, Raza Abbas Syed, Martin Cormican, Dearbháile Morris

Get full text

Clonal Expansion of New Penicillin-Resistant Clade of Neisseria meningitidis Serogroup W Clonal Complex 11, Australia by Shakeel Mowlaboccus, Keith A. Jolley, James E. Bray, Stanley Pang, Yung Thin Lee, Jane D. Bew, David J. Speers, Anthony D. Keil, Geoffrey W. Coombs, Charlene M. Kahler

Get full text

cgMLST characterisation of invasive Neisseria meningitidis serogroup C and W strains associated with increasing disease incidence in the Republic of Ireland. by Robert M Mulhall, Desiree E Bennett, Holly B Bratcher, Keith A Jolley, James E Bray, Piaras P O'Lorcain, Suzanne M Cotter, Martin C J Maiden, Robert J Cunney

Get full text

Evolution of Sequence Type 4821 Clonal Complex Hyperinvasive and Quinolone-Resistant Meningococci by Mingliang Chen, Odile B. Harrison, Holly B. Bratcher, Zhiyan Bo, Keith A. Jolley, Charlene M.C. Rodrigues, James E. Bray, Qinglan Guo, Xi Zhang, Min Chen, Martin C.J. Maiden

Get full text

Hierarchical genomic analysis of carried and invasive serogroup A Neisseria meningitidis during the 2011 epidemic in Chad by Kanny Diallo, Kadija Gamougam, Doumagoum M. Daugla, Odile B. Harrison, James E. Bray, Dominique A. Caugant, Jay Lucidarme, Caroline L. Trotter, Musa Hassan-King, James M. Stuart, Olivier Manigart, Brian M. Greenwood, Martin C. J. Maiden

Get full text

Defining the estimated core genome of bacterial populations using a Bayesian decision model. by Andries J van Tonder, Shilan Mistry, James E Bray, Dorothea M C Hill, Alison J Cody, Chris L Farmer, Keith P Klugman, Anne von Gottberg, Stephen D Bentley, Julian Parkhill, Keith A Jolley, Martin C J Maiden, Angela B Brueggemann

Get full text

Genomic Analyses of >3,100 Nasopharyngeal Pneumococci Revealed Significant Differences Between Pneumococci Recovered in Four Different Geographical Regions by Andries J. van Tonder, Andries J. van Tonder, James E. Bray, Keith A. Jolley, Melissa Jansen van Rensburg, Sigríður J. Quirk, Gunnsteinn Haraldsson, Martin C. J. Maiden, Stephen D. Bentley, Stephen D. Bentley, Stephen D. Bentley, Ásgeir Haraldsson, Helga Erlendsdóttir, Karl G. Kristinsson, Angela B. Brueggemann, Angela B. Brueggemann

Get full text

Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis by Guillaume Méric, Leonardos Mageiros, Johan Pensar, Maisem Laabei, Koji Yahara, Ben Pascoe, Nattinee Kittiwan, Phacharaporn Tadee, Virginia Post, Sarah Lamble, Rory Bowden, James E. Bray, Mario Morgenstern, Keith A. Jolley, Martin C. J. Maiden, Edward J. Feil, Xavier Didelot, Maria Miragaia, Herminia de Lencastre, T. Fintan Moriarty, Holger Rohde, Ruth Massey, Dietrich Mack, Jukka Corander, Samuel K. Sheppard

Get full text

Targeted metagenomics reveals association between severity and pathogen co-detection in infants with respiratory syncytial virus by Gu-Lung Lin, Simon B. Drysdale, Matthew D. Snape, Daniel O’Connor, Anthony Brown, George MacIntyre-Cockett, Esther Mellado-Gomez, Mariateresa de Cesare, M. Azim Ansari, David Bonsall, James E. Bray, Keith A. Jolley, Rory Bowden, Jeroen Aerssens, Louis Bont, Peter J. M. Openshaw, Federico Martinon-Torres, Harish Nair, Tanya Golubchik, Andrew J. Pollard, RESCEU Consortium

Get full text