From structure prediction to genomic screens for novel non-coding RNAs. by Jan Gorodkin, Ivo L Hofacker

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Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix. by Jakob H Havgaard, Elfar Torarinsson, Jan Gorodkin

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Alignment-free comparative genomic screen for structured RNAs using coarse-grained secondary structure dot plots by Yuki Kato, Jan Gorodkin, Jakob Hull Havgaard

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Quality Assessment of Domesticated Animal Genome Assemblies by Stefan E. Seemann, Christian Anthon, Oana Palasca, Jan Gorodkin

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Quality Assessment of Domesticated Animal Genome Assemblies by Stefan E. Seemann, Christian Anthon, Oana Palasca, Jan Gorodkin

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Genome-wide identification of clusters of predicted microRNA binding sites as microRNA sponge candidates. by Xiaoyong Pan, Anne Wenzel, Lars Juhl Jensen, Jan Gorodkin

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CRISPR-Cas9 off-targeting assessment with nucleic acid duplex energy parameters by Ferhat Alkan, Anne Wenzel, Christian Anthon, Jakob Hull Havgaard, Jan Gorodkin

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Associating transcription factors and conserved RNA structures with gene regulation in the human brain by Nikolai Hecker, Stefan E. Seemann, Asli Silahtaroglu, Walter L. Ruzzo, Jan Gorodkin

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Transcriptome-wide analysis of UTRs in non-small cell lung cancer reveals cancer-related genes with SNV-induced changes on RNA secondary structure and miRNA target sites. by Radhakrishnan Sabarinathan, Anne Wenzel, Peter Novotny, Xiaojia Tang, Krishna R Kalari, Jan Gorodkin

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CRISPR/Cas9 gRNA activity depends on free energy changes and on the target PAM context by Giulia I. Corsi, Kunli Qu, Ferhat Alkan, Xiaoguang Pan, Yonglun Luo, Jan Gorodkin

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Differentially Expressed miRNAs in Ulcerative Colitis and Crohn’s Disease by Reza Yarani, Reza Yarani, Ali Shojaeian, Oana Palasca, Oana Palasca, Oana Palasca, Nadezhda T. Doncheva, Nadezhda T. Doncheva, Nadezhda T. Doncheva, Lars Juhl Jensen, Lars Juhl Jensen, Jan Gorodkin, Jan Gorodkin, Flemming Pociot, Flemming Pociot, Flemming Pociot, Flemming Pociot

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Joint Profiling of miRNAs and mRNAs Reveals miRNA Mediated Gene Regulation in the Göttingen Minipig Obesity Model. by Caroline M Junker Mentzel, Ferhat Alkan, Helle Keinicke, Mette J Jacobsen, Jan Gorodkin, Merete Fredholm, Susanna Cirera

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IFN-λ and microRNAs are important modulators of the pulmonary innate immune response against influenza A (H1N2) infection in pigs. by Louise Brogaard, Lars E Larsen, Peter M H Heegaard, Christian Anthon, Jan Gorodkin, Ralf Dürrwald, Kerstin Skovgaard

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Simultaneous DNA and RNA Mapping of Somatic Mitochondrial Mutations across Diverse Human Cancers. by James B Stewart, Babak Alaei-Mahabadi, Radhakrishnan Sabarinathan, Tore Samuelsson, Jan Gorodkin, Claes M Gustafsson, Erik Larsson

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RNA-Seq Study on the <i>Longissimus thoracis</i> Muscle of Italian Large White Pigs Fed Extruded Linseed with or without Antioxidants and Polyphenols by Jacopo Vegni, Ying Sun, Stefan E. Seemann, Martina Zappaterra, Roberta Davoli, Stefania Dall’Olio, Jan Gorodkin, Paolo Zambonelli

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RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure. by Corinna Theis, Craig L Zirbel, Christian Höner Zu Siederdissen, Christian Anthon, Ivo L Hofacker, Henrik Nielsen, Jan Gorodkin

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Flagella disruption in Bacillus subtilis increases amylase production yield by Annaleigh Ohrt Fehler, Thomas Beuchert Kallehauge, Adrian Sven Geissler, Enrique González-Tortuero, Stefan Ernst Seemann, Jan Gorodkin, Jeppe Vinther

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Gender and Obesity Specific MicroRNA Expression in Adipose Tissue from Lean and Obese Pigs. by Caroline M Junker Mentzel, Christian Anthon, Mette J Jacobsen, Peter Karlskov-Mortensen, Camilla S Bruun, Claus B Jørgensen, Jan Gorodkin, Susanna Cirera, Merete Fredholm

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The transcriptomic landscape of neurons carrying PSEN1 mutations reveals changes in extracellular matrix components and non-coding gene expression by Giulia I. Corsi, Veerendra P. Gadekar, Henriette Haukedal, Nadezhda T. Doncheva, Christian Anthon, Sheetal Ambardar, Dasaradhi Palakodeti, Poul Hyttel, Kristine Freude, Stefan E. Seemann, Jan Gorodkin

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The impact of PrsA over-expression on the Bacillus subtilis transcriptome during fed-batch fermentation of alpha-amylase production by Adrian S. Geissler, Line D. Poulsen, Nadezhda T. Doncheva, Christian Anthon, Stefan E. Seemann, Enrique González-Tortuero, Anne Breüner, Lars J. Jensen, Carsten Hjort, Jeppe Vinther, Jan Gorodkin

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