Genomic signatures for predicting the zoonotic potential of novel viruses. by Jason T Ladner

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Reply to “Expanding the Conversation on High-Throughput Virome Sequencing Standards To Include Consideration of Microbial Contamination Sources” by Jason T. Ladner, Michael R. Wiley, Gustavo Palacios

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Recurrent SARS-CoV-2 mutations at Spike D796 evade antibodies from pre-Omicron convalescent and vaccinated subjects by Evan A. Elko, Heather L. Mead, Georgia A. Nelson, John A. Zaia, Jason T. Ladner, John A. Altin

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Comparative Genomics Analyses Support the Reclassification of Bisgaard Taxon 40 as Mergibacter gen. nov., With Mergibacter septicus sp. nov. as Type Species: Novel Insights Into th... by Eliana De Luca, Eliana De Luca, Sonsiray Álvarez-Narváez, Sonsiray Álvarez-Narváez, Grazieli Maboni, Grazieli Maboni, Grazieli Maboni, Rodrigo P. Baptista, Rodrigo P. Baptista, Nicole M. Nemeth, Kevin D. Niedringhaus, Kevin D. Niedringhaus, Jason T. Ladner, Jason T. Ladner, Jeffrey M. Lorch, Galina Koroleva, Sean Lovett, Gustavo F. Palacios, Susan Sanchez, Susan Sanchez

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Highly Multiplexed Serology for Nonhuman Mammals by Alexa Schuettenberg, Alejandra Piña, Morgan Metrailer, Ronald Guillermo Peláez-Sánchez, Piedad Agudelo-Flórez, Juan Álvaro Lopez, Luke Ryle, Fernando P. Monroy, John A. Altin, Jason T. Ladner

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The population genetics of the causative agent of snake fungal disease indicate recent introductions to the USA. by Jason T Ladner, Jonathan M Palmer, Cassandra L Ettinger, Jason E Stajich, Terence M Farrell, Brad M Glorioso, Becki Lawson, Steven J Price, Anne G Stengle, Daniel A Grear, Jeffrey M Lorch

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Virome-wide detection of natural infection events and the associated antibody dynamics using longitudinal highly-multiplexed serology by Erin J. Kelley, Sierra N. Henson, Fatima Rahee, Annalee S. Boyle, Anna L. Engelbrektson, Georgia A. Nelson, Heather L. Mead, N. Leigh Anderson, Morteza Razavi, Richard Yip, Jason T. Ladner, Thomas J. Scriba, John A. Altin

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Global phylogenomic diversity of Brucella abortus: spread of a dominant lineage by Nicolette R. Janke, Charles H. D. Williamson, Kevin P. Drees, Marcela Suárez-Esquivel, Adrian R. Allen, Jason T. Ladner, Christine R. Quance, Suelee Robbe-Austerman, David O’Callaghan, David O’Callaghan, Adrian M. Whatmore, Jeffrey T. Foster

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Persistence of Brucella abortus lineages revealed by genomic characterization and phylodynamic analysis. by Marcela Suárez-Esquivel, Gabriela Hernández-Mora, Nazareth Ruiz-Villalobos, Elías Barquero-Calvo, Carlos Chacón-Díaz, Jason T Ladner, Gerardo Oviedo-Sánchez, Jeffrey T Foster, Norman Rojas-Campos, Esteban Chaves-Olarte, Nicholas R Thomson, Edgardo Moreno, Caterina Guzmán-Verri

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Active Ebola Virus Replication and Heterogeneous Evolutionary Rates in EVD Survivors by Shannon L.M. Whitmer, Jason T. Ladner, Michael R. Wiley, Ketan Patel, Gytis Dudas, Andrew Rambaut, Foday Sahr, Karla Prieto, Samuel S. Shepard, Ellie Carmody, Barbara Knust, Dhamari Naidoo, Gibrilla Deen, Pierre Formenty, Stuart T. Nichol, Gustavo Palacios, Ute Ströher

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Emergence of Ebola Virus Escape Variants in Infected Nonhuman Primates Treated with the MB-003 Antibody Cocktail by Jeffrey R. Kugelman, Johanny Kugelman-Tonos, Jason T. Ladner, James Pettit, Carolyn M. Keeton, Elyse R. Nagle, Karla Y. Garcia, Jeffrey W. Froude, Ana I. Kuehne, Jens H. Kuhn, Sina Bavari, Larry Zeitlin, John M. Dye, Gene G. Olinger, Mariano Sanchez-Lockhart, Gustavo F. Palacios

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A spontaneous mutation in kdsD, a biosynthesis gene for 3 Deoxy-D-manno-Octulosonic Acid, occurred in a ciprofloxacin resistant strain of Francisella tularensis and caused a high l... by Taylor Chance, Jennifer Chua, Ronald G Toothman, Jason T Ladner, Jonathan E Nuss, Jo Lynne Raymond, Fabrice V Biot, Samandra Demons, Lynda Miller, Stephanie Halasohoris, Sherry Mou, Galina Koroleva, Sean Lovett, Gustavo Palacios, Nicholas J Vietri, Patricia L Worsham, Christopher K Cote, Todd M Kijek, Joel A Bozue

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Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity [version 2; peer review: 2 approved] by Evan Bolyen, Matthew R. Dillon, Nicholas A. Bokulich, Jason T. Ladner, Brendan B. Larsen, Crystal M. Hepp, Darrin Lemmer, Jason W. Sahl, Andrew Sanchez, Chris Holdgraf, Chris Sewell, Aakash G. Choudhury, John Stachurski, Matthew McKay, Anthony Simard, David M. Engelthaler, Michael Worobey, Paul Keim, J. Gregory Caporaso

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Ebola Virus Infections in Nonhuman Primates Are Temporally Influenced by Glycoprotein Poly-U Editing Site Populations in the Exposure Material by John C. Trefry, Suzanne E. Wollen, Farooq Nasar, Joshua D. Shamblin, Steven J. Kern, Jeremy J. Bearss, Michelle A. Jefferson, Taylor B. Chance, Jeffery R. Kugelman, Jason T. Ladner, Anna N. Honko, Dean J. Kobs, Morgan Q.S. Wending, Carol L. Sabourin, William D. Pratt, Gustavo F. Palacios, M. Louise M. Pitt

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Monitoring of Ebola Virus Makona Evolution through Establishment of Advanced Genomic Capability in Liberia by Jeffrey R. Kugelman, Michael R. Wiley, Suzanne Mate, Jason T. Ladner, Brett Beitzel, Lawrence Fakoli, Fahn Taweh, Karla Prieto, Joseph W. Diclaro, Timothy Minogue, Randal J. Schoepp, Kurt E. Schaecher, James Pettitt, Stacey Bateman, Joseph Fair, Jens H. Kuhn, Lisa Hensley, Daniel J. Park, Pardis C. Sabeti, Mariano Sanchez-Lockhart, Fatorma K. Bolay, Gustavo Palacios

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An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona by Jason T. Ladner, Brendan B. Larsen, Jolene R. Bowers, Crystal M. Hepp, Evan Bolyen, Megan Folkerts, Krystal Sheridan, Ashlyn Pfeiffer, Hayley Yaglom, Darrin Lemmer, Jason W. Sahl, Emily A. Kaelin, Rabia Maqsood, Nicholas A. Bokulich, Grace Quirk, Thomas D. Watts, Kenneth K. Komatsu, Victor Waddell, Efrem S. Lim, J. Gregory Caporaso, David M. Engelthaler, Michael Worobey, Paul Keim

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COVID-19 vaccination elicits an evolving, cross-reactive antibody response to epitopes conserved with endemic coronavirus spike proteins by Evan A. Elko, Georgia A. Nelson, Heather L. Mead, Erin J. Kelley, Sophia T. Carvalho, Nathan G. Sarbo, Caroline E. Harms, Virginia Le Verche, Angelo A. Cardoso, Jennifer L. Ely, Annalee S. Boyle, Alejandra Piña, Sierra N. Henson, Fatima Rahee, Paul S. Keim, Kimberly R. Celona, Jinhee Yi, Erik W. Settles, Daniela A. Bota, George C. Yu, Sheldon R. Morris, John A. Zaia, Jason T. Ladner, John A. Altin

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