The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes by Jason W. Sahl, J. Gregory Caporaso, David A. Rasko, Paul Keim

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CRISPR-cas subtype I-Fb in Acinetobacter baumannii: evolution and utilization for strain subtyping. by Nabil Karah, Ørjan Samuelsen, Raffaele Zarrilli, Jason W Sahl, Sun Nyunt Wai, Bernt Eric Uhlin

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Complete mitochondrial genome of Onchocerca lupi (Nematoda, Onchocercidae) by Chandler C. Roe, Jennifer Urbanz, Lela Andrews, Guilherme G. Verocai, David M. Engelthaler, Crystal M. Hepp, Jason W. Sahl

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LupiQuant: A real-time PCR based assay for determining host-to-parasite DNA ratios of Onchocerca lupi and host Canis lupus from onchocercosis samples. by Chandler C Roe, Jennifer Urbanz, Candace Auten, Guilherme G Verocai, Kelly Upshaw-Bia, Olivia Holiday, Crystal Hepp, Jason W Sahl

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ColiSeq: a multiplex amplicon assay that provides strain level resolution of Escherichia coli directly from clinical specimens by Charles H. D. Williamson, Adam J. Vazquez, Amalee E. Nunnally, Kristen Kyger, Viacheslav Y. Fofanov, Tara N. Furstenau, Heidie M. Hornstra, Joel Terriquez, Paul Keim, Jason W. Sahl

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Detection of Leptospira kirschneri in a short-beaked common dolphin (Delphinus delphis delphis) stranded off the coast of southern California, USA by K. C. Prager, Kerri Danil, Elyse Wurster, Kathleen M. Colegrove, Renee Galloway, Niesa Kettler, Rinosh Mani, Ryelan F. McDonough, Jason W. Sahl, Nathan E. Stone, David M. Wagner, James O. Lloyd-Smith

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Temporal phylogeography of Yersinia pestis in Madagascar: Insights into the long-term maintenance of plague. by Amy J Vogler, Voahangy Andrianaivoarimanana, Sandra Telfer, Carina M Hall, Jason W Sahl, Crystal M Hepp, Heather Centner, Genevieve Andersen, Dawn N Birdsell, Lila Rahalison, Roxanne Nottingham, Paul Keim, David M Wagner, Minoarisoa Rajerison

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Burkholderia pseudomallei OMVs derived from infection mimicking conditions elicit similar protection to a live-attenuated vaccine by Sarah M. Baker, Erik W. Settles, Christopher Davitt, Patrick Gellings, Nicole Kikendall, Joseph Hoffmann, Yihui Wang, Jacob Bitoun, Kasi-Russell Lodrigue, Jason W. Sahl, Paul Keim, Chad Roy, James McLachlan, Lisa A. Morici

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Genomic characterization of Francisella tularensis and other diverse Francisella species from complex samples. by David M Wagner, Dawn N Birdsell, Ryelan F McDonough, Roxanne Nottingham, Karisma Kocos, Kimberly Celona, Yasemin Özsürekci, Caroline Öhrman, Linda Karlsson, Kerstin Myrtennäs, Andreas Sjödin, Anders Johansson, Paul S Keim, Mats Forsman, Jason W Sahl

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DNA Capture and Enrichment: A Culture-Independent Approach for Characterizing the Genomic Diversity of Pathogenic <i>Leptospira</i> Species by Nathan E. Stone, Ryelan F. McDonough, Camila Hamond, Karen LeCount, Joseph D. Busch, Katherine L. Dirsmith, Sarai Rivera-Garcia, Fred Soltero, Laura M. Arnold, Zachary Weiner, Renee L. Galloway, Linda K. Schlater, Jarlath E. Nally, Jason W. Sahl, David M. Wagner

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Melioidosis in goats at a single Australian farm was caused by multiple diverse lineages of Burkholderia pseudomallei present in soil. by Joseph D Busch, Mirjam Kaestli, Mark Mayo, Chandler C Roe, Adam J Vazquez, Jodie Low Choy, Glenda Harrington, Suresh Benedict, Nathan E Stone, Christopher J Allender, Richard A Bowen, Paul Keim, Bart J Currie, Jason W Sahl, Apichai Tuanyok, David M Wagner

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Reorganized Genomic Taxonomy of <i>Francisellaceae</i> Enables Design of Robust Environmental PCR Assays for Detection of <i>Francisella tularensis</i> by Caroline Öhrman, Jason W. Sahl, Andreas Sjödin, Ingrid Uneklint, Rebecca Ballard, Linda Karlsson, Ryelan F. McDonough, David Sundell, Kathleen Soria, Stina Bäckman, Kitty Chase, Björn Brindefalk, Shanmuga Sozhamannan, Adriana Vallesi, Emil Hägglund, Jose Gustavo Ramirez-Paredes, Johanna Thelaus, Duncan Colquhoun, Kerstin Myrtennäs, Dawn Birdsell, Anders Johansson, David M. Wagner, Mats Forsman

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Identification of equine mares as reservoir hosts for pathogenic species of Leptospira by Camila Hamond, Camila Hamond, Emma N. Adam, Nathan E. Stone, Karen LeCount, Karen LeCount, Tammy Anderson, Tammy Anderson, Ellie J. Putz, Patrick Camp, Jessica Hicks, Tod Stuber, Hans van der Linden, Darrell O. Bayles, Jason W. Sahl, Linda K. Schlater, Linda K. Schlater, David M. Wagner, Jarlath E. Nally, Jarlath E. Nally

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A mutation associated with resistance to synthetic pyrethroids is widespread in US populations of the tropical lineage of Rhipicephalus sanguineus s.l by Nathan E. Stone, Rebecca Ballard, Reanna M. Bourgeois, Grant L. Pemberton, Ryelan F. McDonough, Megan C. Ruby, Laura H. Backus, Andrés M. López-Pérez, Darrin Lemmer, Zane Koch, Maureen Brophy, Christopher D. Paddock, Gilbert J. Kersh, William L. Nicholson, Jason W. Sahl, Joseph D. Busch, Johanna S. Salzer, Janet E. Foley, David M. Wagner

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Biting midges (Diptera: Ceratopogonidae) as putative vectors of zoonotic Onchocerca lupi (Nematoda: Onchocercidae) in northern Arizona and New Mexico, southwestern United States by Chandler C. Roe, Chandler C. Roe, Olivia Holiday, Kelly Upshaw-Bia, Gaven Benally, Charles H. D. Williamson, Jennifer Urbanz, Guilherme G. Verocai, Chase L. Ridenour, Chase L. Ridenour, Chase L. Ridenour, Roxanne Nottingham, Morgan A. Ford, Derek P. Lake, Theodore A. Kennedy, Crystal M. Hepp, Crystal M. Hepp, Crystal M. Hepp, Jason W. Sahl

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Phylogeographic, genomic, and meropenem susceptibility analysis of Burkholderia ubonensis. by Erin P Price, Derek S Sarovich, Jessica R Webb, Carina M Hall, Sierra A Jaramillo, Jason W Sahl, Mirjam Kaestli, Mark Mayo, Glenda Harrington, Anthony L Baker, Lindsay C Sidak-Loftis, Erik W Settles, Madeline Lummis, James M Schupp, John D Gillece, Apichai Tuanyok, Jeffrey Warner, Joseph D Busch, Paul Keim, Bart J Currie, David M Wagner

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Co-Occurrence of <i>Francisella</i>, Spotted Fever Group <i>Rickettsia</i>, and <i>Midichloria</i> in Avian-Associated <i>Hyalomma rufipes</i> by Tove Hoffman, Andreas Sjödin, Caroline Öhrman, Linda Karlsson, Ryelan Francis McDonough, Jason W. Sahl, Dawn Birdsell, David M. Wagner, Laura G. Carra, Peter Wilhelmsson, John H.-O. Pettersson, Christos Barboutis, Jordi Figuerola, Alejandro Onrubia, Yosef Kiat, Dario Piacentini, Thomas G. T. Jaenson, Per-Eric Lindgren, Sara Moutailler, Thord Fransson, Mats Forsman, Kenneth Nilsson, Åke Lundkvist, Björn Olsen

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Multiple Introductions of Yersinia pestis during Urban Pneumonic Plague Epidemic, Madagascar, 2017 by Voahangy Andrianaivoarimanana, Cyril Savin, Dawn N. Birdsell, Amy J. Vogler, Anne-Sophie Le Guern, Soloandry Rahajandraibe, Sylvie Brémont, Soanandrasana Rahelinirina, Jason W. Sahl, Beza Ramasindrazana, Rado Jean Luc Rakotonanahary, Fanjasoa Rakotomanana, Rindra Randremanana, Viviane Maheriniaina, Vaoary Razafimbia, Aurelia Kwasiborski, Charlotte Balière, Maherisoa Ratsitorahina, Laurence Baril, Paul Keim, Valérie Caro, Voahangy Rasolofo, André Spiegel, Javier Pizarro-Cerda, David M. Wagner, Minoarisoa Rajerison

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Burkholderia thailandensis Isolated from the Environment, United States by Carina M. Hall, Nathan E. Stone, Madison Martz, Shelby M. Hutton, Ella Santana-Propper, Lora Versluis, Kieston Guidry, Marielisa Ortiz, Joseph D. Busch, Trevor Maness, Jonathan Stewart, Tom Sidwa, Jay E. Gee, Mindy G. Elrod, Julia K. Petras, Maureen C. Ty, Christopher Gulvik, Zachary P. Weiner, Johanna S. Salzer, Alex R. Hoffmaster, Sarai Rivera-Garcia, Paul Keim, Amanda Kieffer, Jason W. Sahl, Fred Soltero, David M. Wagner

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Pathogenic Leptospira are widespread in the urban wildlife of southern California by Sarah K. Helman, Amanda F. N. Tokuyama, Riley O. Mummah, Nathan E. Stone, Mason W. Gamble, Celine E. Snedden, Benny Borremans, Ana C. R. Gomez, Caitlin Cox, Julianne Nussbaum, Isobel Tweedt, David A. Haake, Renee L. Galloway, Javier Monzón, Seth P. D. Riley, Jeff A. Sikich, Justin Brown, Anthony Friscia, Jason W. Sahl, David M. Wagner, Jessica W. Lynch, Katherine C. Prager, James O. Lloyd-Smith

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