Comparative Analysis of Within-Host Mutation Patterns and Diversity of Hepatitis C Virus Subtypes 1a, 1b, and 3a by Kaho H. Tisthammer, Weiyan Dong, Jeffrey B. Joy, Pleuni S. Pennings

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Assessing in vivo mutation frequencies and creating a high-resolution genome-wide map of fitness costs of Hepatitis C virus. by Kaho H Tisthammer, Caroline Solis, Faye Orcales, Madu Nzerem, Ryan Winstead, Weiyan Dong, Jeffrey B Joy, Pleuni S Pennings

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HIV proviral genetic diversity, compartmentalization and inferred dynamics in lung and blood during long-term suppressive antiretroviral therapy. by Aniqa Shahid, Bradley R Jones, Julia S W Yang, Winnie Dong, Tawimas Shaipanich, Kathryn Donohoe, Chanson J Brumme, Jeffrey B Joy, Janice M Leung, Zabrina L Brumme

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Genomic epidemiology of the first two waves of SARS-CoV-2 in Canada by Angela McLaughlin, Vincent Montoya, Rachel L Miller, Gideon J Mordecai, Canadian COVID-19 Genomics Network (CanCOGen) Consortium, Michael Worobey, Art FY Poon, Jeffrey B Joy

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HIV reservoirs are dominated by genetically younger and clonally enriched proviruses by Natalie N. Kinloch, Aniqa Shahid, Winnie Dong, Don Kirkby, Bradley R. Jones, Charlotte J. Beelen, Daniel MacMillan, Guinevere Q. Lee, Talia M. Mota, Hanwei Sudderuddin, Evan Barad, Marianne Harris, Chanson J. Brumme, R. Brad Jones, Mark A. Brockman, Jeffrey B. Joy, Zabrina L. Brumme

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Community Insights in Phylogenetic HIV Research: The CIPHR Project Protocol by François Cholette, Lisa Lazarus, Pascal Macharia, Laura H. Thompson, Samuel Githaiga, John Mathenge, Jeffrey Walimbwa, Irene Kuria, Silvia Okoth, Solomon Wambua, Harrison Albert, Peninah Mwangi, Joyce Adhiambo, Rosemary Kasiba, Esther Juma, Parinita Battacharjee, Joshua Kimani, Paul Sandstrom, Adrienne F. A. Meyers, Jeffrey B. Joy, Matthew Thomann, Paul J. McLaren, Souradet Shaw, Sharmistha Mishra, Marissa L. Becker, Lyle McKinnon, Robert Lorway

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