ToMExO: A probabilistic tree-structured model for cancer progression. by Mohammadreza Mohaghegh Neyshabouri, Jens Lagergren

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Genome-wide survey for biologically functional pseudogenes. by Orjan Svensson, Lars Arvestad, Jens Lagergren

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Inferring tumor progression in large datasets. by Mohammadreza Mohaghegh Neyshabouri, Seong-Hwan Jun, Jens Lagergren

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Fast and general tests of genetic interaction for genome-wide association studies. by Mattias Frånberg, Rona J Strawbridge, Anders Hamsten, PROCARDIS consortium, Ulf de Faire, Jens Lagergren, Bengt Sennblad

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Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data by Agnieszka Geras, Shadi Darvish Shafighi, Kacper Domżał, Igor Filipiuk, Alicja Rączkowska, Paulina Szymczak, Hosein Toosi, Leszek Kaczmarek, Łukasz Koperski, Jens Lagergren, Dominika Nowis, Ewa Szczurek

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Reconstructing clonal tree for phylo-phenotypic characterization of cancer using single-cell transcriptomics by Seong-Hwan Jun, Hosein Toosi, Jeff Mold, Camilla Engblom, Xinsong Chen, Ciara O’Flanagan, Michael Hagemann-Jensen, Rickard Sandberg, Samuel Aparicio, Johan Hartman, Andrew Roth, Jens Lagergren

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Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity by Emelie Berglund, Jonas Maaskola, Niklas Schultz, Stefanie Friedrich, Maja Marklund, Joseph Bergenstråhle, Firas Tarish, Anna Tanoglidi, Sanja Vickovic, Ludvig Larsson, Fredrik Salmén, Christoph Ogris, Karolina Wallenborg, Jens Lagergren, Patrik Ståhl, Erik Sonnhammer, Thomas Helleday, Joakim Lundeberg

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