CoNet app: inference of biological association networks using Cytoscape [version 2; referees: 2 approved] by Karoline Faust, Jeroen Raes

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Systematic optimization of fermentation conditions for in vitro fermentations with fecal inocula by Jonas Poppe, Sara Vieira-Silva, Sara Vieira-Silva, Jeroen Raes, Jeroen Raes, Kristin Verbeke, Kristin Verbeke, Gwen Falony, Gwen Falony, Gwen Falony

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Prebiotic Wheat Bran Fractions Induce Specific Microbiota Changes by Kevin D’hoe, Kevin D’hoe, Kevin D’hoe, Lorenza Conterno, Lorenza Conterno, Francesca Fava, Gwen Falony, Gwen Falony, Sara Vieira-Silva, Sara Vieira-Silva, Joan Vermeiren, Kieran Tuohy, Jeroen Raes, Jeroen Raes, Jeroen Raes

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Expanding the scope and scale of microbiome research by Rob Knight, Ruth E. Ley, Jeroen Raes, Elizabeth A. Grice

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Short chain fatty acids and its producing organisms: An overlooked therapy for IBD? by Sara Deleu, Kathleen Machiels, Jeroen Raes, Kristin Verbeke, Séverine Vermeire

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How informative is the mouse for human gut microbiota research? by Thi Loan Anh Nguyen, Sara Vieira-Silva, Adrian Liston, Jeroen Raes

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A nitrile hydratase in the eukaryote Monosiga brevicollis. by Konrad U Foerstner, Tobias Doerks, Jean Muller, Jeroen Raes, Peer Bork

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Universally distributed single-copy genes indicate a constant rate of horizontal transfer. by Christopher J Creevey, Tobias Doerks, David A Fitzpatrick, Jeroen Raes, Peer Bork

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The probiotic Butyricicoccus pullicaecorum reduces feed conversion and protects from potentially harmful intestinal microorganisms in broilers by Venessa Eeckhaut, Jun Wang, Jun Wang, Alexander Van Parys, Freddy Haesebrouck, Marie Joossens, Marie Joossens, Gwen Falony, Gwen Falony, Jeroen Raes, Jeroen Raes, Richard Ducatelle, Filip Van Immerseel

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The role of short-chain fatty acids (SCFAs) in regulating stress responses, eating behavior, and nutritional state in anorexia nervosa: protocol for a randomized controlled trial by Robin Quagebeur, Boushra Dalile, Jeroen Raes, Lukas Van Oudenhove, Kristin Verbeke, Elske Vrieze

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Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases by Verónica Lloréns-Rico, Sara Vieira-Silva, Pedro J. Gonçalves, Gwen Falony, Jeroen Raes

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Technical versus biological variability in a synthetic human gut community by Charlotte van de Velde, Clémence Joseph, Kenneth Simoens, Jeroen Raes, Kristel Bernaerts, Karoline Faust

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A molecular study of microbe transfer between distant environments. by Sean D Hooper, Jeroen Raes, Konrad U Foerstner, Eoghan D Harrington, Daniel Dalevi, Peer Bork

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Microbial co-occurrence relationships in the human microbiome. by Karoline Faust, J Fah Sathirapongsasuti, Jacques Izard, Nicola Segata, Dirk Gevers, Jeroen Raes, Curtis Huttenhower

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Gut microbiota response to in vitro transit time variation is mediated by microbial growth rates, nutrient use efficiency and adaptation to in vivo transit time by Yorick Minnebo, Karen Delbaere, Valerie Goethals, Jeroen Raes, Tom Van de Wiele, Kim De Paepe

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Trial in Elderly with Musculoskeletal Problems due to Underlying Sarcopenia—Faeces to Unravel the Gut and Inflammation Translationally (TEMPUS-FUGIT): protocol of a cross-sequentia... by Laurence Lapauw, Jolan Dupont, Nadjia Amini, Laura Vercauteren, Sabine Verschueren, Jos Tournoy, Jeroen Raes, Evelien Gielen

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The Effect of ß-Glucan Prebiotic on Kidney Function, Uremic Toxins and Gut Microbiome in Stage 3 to 5 Chronic Kidney Disease (CKD) Predialysis Participants: A Randomized Controlled... by Zarina Ebrahim, Sebastian Proost, Raul Yhossef Tito, Jeroen Raes, Griet Glorieux, Mohammed Rafique Moosa, Renée Blaauw

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Decreasing the Crystallinity and Degree of Polymerization of Cellulose Increases Its Susceptibility to Enzymatic Hydrolysis and Fermentation by Colon Microbiota by Karel Thielemans, Yamina De Bondt, Luke Comer, Jeroen Raes, Nadia Everaert, Bert F. Sels, Christophe M. Courtin

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Temporal variability in quantitative human gut microbiome profiles and implications for clinical research by Doris Vandeputte, Lindsey De Commer, Raul Y. Tito, Gunter Kathagen, João Sabino, Séverine Vermeire, Karoline Faust, Jeroen Raes

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Correction to: Disentangling environmental effects in microbial association networks by Ina Maria Deutschmann, Gipsi Lima-Mendez, Anders K. Krabberød, Jeroen Raes, Sergio M. Vallina, Karoline Faust, Ramiro Logares

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