Deep learning neural network tools for proteomics by Jesse G. Meyer

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Positional SHAP (PoSHAP) for Interpretation of machine learning models trained from biological sequences. by Quinn Dickinson, Jesse G Meyer

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Phase variable acetylation of lipooligosaccharide modifies antibody production and opsonophagocytic killing of non-typeable Haemophilus influenzae by Brandon M. Wills, Preeti Garai, Quinn Dickinson, Jesse G. Meyer, Kenneth L. Brockman

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EpyNN: Educational python for Neural Networks by Florian Malard, Laura Danner, Emilie Rouzies, Jesse G. Meyer, Ewen Lescop, Stéphanie Olivier-Van Stichelen

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Site-specific identification and quantitation of endogenous SUMO modifications under native conditions by Ryan J. Lumpkin, Hongbo Gu, Yiying Zhu, Marilyn Leonard, Alla S. Ahmad, Karl R. Clauser, Jesse G. Meyer, Eric J. Bennett, Elizabeth A. Komives

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Temporal dynamics of liver mitochondrial protein acetylation and succinylation and metabolites due to high fat diet and/or excess glucose or fructose. by Jesse G Meyer, Samir Softic, Nathan Basisty, Matthew J Rardin, Eric Verdin, Bradford W Gibson, Olga Ilkayeva, Christopher B Newgard, C Ronald Kahn, Birgit Schilling

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Identification of Novel Protein Lysine Acetyltransferases in <named-content content-type="genus-species">Escherichia coli</named-content> by David G. Christensen, Jesse G. Meyer, Jackson T. Baumgartner, Alexandria K. D’Souza, William C. Nelson, Samuel H. Payne, Misty L. Kuhn, Birgit Schilling, Alan J. Wolfe

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Correction for Christensen et al., “Identification of Novel Protein Lysine Acetyltransferases in <named-content content-type="genus-species">Escherichia coli</named-content>” by David G. Christensen, Jesse G. Meyer, Jackson T. Baumgartner, Alexandria K. D’Souza, William C. Nelson, Samuel H. Payne, Misty L. Kuhn, Birgit Schilling, Alan J. Wolfe

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ChatGPT and large language models in academia: opportunities and challenges by Jesse G. Meyer, Ryan J. Urbanowicz, Patrick C. N. Martin, Karen O’Connor, Ruowang Li, Pei-Chen Peng, Tiffani J. Bright, Nicholas Tatonetti, Kyoung Jae Won, Graciela Gonzalez-Hernandez, Jason H. Moore

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SUCLA2 mutations cause global protein succinylation contributing to the pathomechanism of a hereditary mitochondrial disease by Philipp Gut, Sanna Matilainen, Jesse G. Meyer, Pieti Pällijeff, Joy Richard, Christopher J. Carroll, Liliya Euro, Christopher B. Jackson, Pirjo Isohanni, Berge A. Minassian, Reem A. Alkhater, Elsebet Østergaard, Gabriele Civiletto, Alice Parisi, Jonathan Thevenet, Matthew J. Rardin, Wenjuan He, Yuya Nishida, John C. Newman, Xiaojing Liu, Stefan Christen, Sofia Moco, Jason W. Locasale, Birgit Schilling, Anu Suomalainen, Eric Verdin

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