On tower and checkerboard neural network architectures for gene expression inference by Vladimír Kunc, Jiří Kléma

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On transformative adaptive activation functions in neural networks for gene expression inference. by Vladimír Kunc, Jiří Kléma

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Semantic biclustering for finding local, interpretable and predictive expression patterns by Jiří Kléma, František Malinka, Filip železný

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Finding semantic patterns in omics data using concept rule learning with an ontology-based refinement operator by František Malinka, Filip železný, Jiří Kléma

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circGPA: circRNA functional annotation based on probability-generating functions by Petr Ryšavý, Jiří Kléma, Michaela Dostálová Merkerová

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Replication of SNP associations with keratoconus in a Czech cohort. by Petra Liskova, Lubica Dudakova, Anna Krepelova, Jiri Klema, Pirro G Hysi

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Semantic clustering analysis of E3-ubiquitin ligases in gastrointestinal tract defines genes ontology clusters with tissue expression patterns by Veronika Iatsiuk, Frantisek Malinka, Marketa Pickova, Jolana Tureckova, Jiri Klema, Frantisek Spoutil, Vendula Novosadova, Jan Prochazka, Radislav Sedlacek

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Molecular Fingerprints of Borderline Changes in Kidney Allografts Are Influenced by Donor Category by Petra Hruba, Zdenek Krejcik, Michaela Dostalova Merkerova, Jiri Klema, Viktor Stranecky, Janka Slatinska, Jana Maluskova, Eva Honsova, Ondrej Viklicky, Ondrej Viklicky

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Author Correction: Molecular patterns of isolated tubulitis differ from tubulitis with interstitial inflammation in early indication biopsies of kidney allografts by Petra Hruba, Katelynn Madill-Thomsen, Martina Mackova, Jiri Klema, Jana Maluskova, Ludek Voska, Alena Parikova, Janka Slatinska, Philip F. Halloran, Ondrej Viklicky

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Molecular patterns of isolated tubulitis differ from tubulitis with interstitial inflammation in early indication biopsies of kidney allografts by Petra Hruba, Katellyn Madill-Thomsen, Martina Mackova, Jiri Klema, Jana Maluskova, Ludek Voska, Alena Parikova, Janka Slatinska, Philip F. Halloran, Ondrej Viklicky

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Molecular Responses in THP-1 Macrophage-Like Cells Exposed to Diverse Nanoparticles by Tana Brzicova, Eliska Javorkova, Kristyna Vrbova, Alena Zajicova, Vladimir Holan, Dominik Pinkas, Vlada Philimonenko, Jitka Sikorova, Jiri Klema, Jan Topinka, Pavel Rossner

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Predictive Potential of Flow Cytometry Crossmatching in Deceased Donor Kidney Transplant Recipients Subjected to Peritransplant Desensitization by Klara Osickova, Petra Hruba, Katerina Kabrtova, Jiri Klema, Jana Maluskova, Jana Maluskova, Antonij Slavcev, Janka Slatinska, Tomas Marada, Georg A. Böhmig, Ondrej Viklicky

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The Differential Effect of Carbon Dots on Gene Expression and DNA Methylation of Human Embryonic Lung Fibroblasts as a Function of Surface Charge and Dose by Michal Sima, Kristyna Vrbova, Tana Zavodna, Katerina Honkova, Irena Chvojkova, Antonin Ambroz, Jiri Klema, Andrea Rossnerova, Katerina Polakova, Tomas Malina, Jan Belza, Jan Topinka, Pavel Rossner

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LncRNA Profiling Reveals That the Deregulation of H19, WT1-AS, TCL6, and LEF1-AS1 Is Associated with Higher-Risk Myelodysplastic Syndrome by Katarina Szikszai, Zdenek Krejcik, Jiri Klema, Nikoleta Loudova, Andrea Hrustincova, Monika Belickova, Monika Hruba, Jitka Vesela, Viktor Stranecky, David Kundrat, Pavla Pecherkova, Jaroslav Cermak, Anna Jonasova, Michaela Dostalova Merkerova

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Gene Expression and Epigenetic Changes in Mice Following Inhalation of Copper(II) Oxide Nanoparticles by Pavel Rossner, Kristyna Vrbova, Andrea Rossnerova, Tana Zavodna, Alena Milcova, Jiri Klema, Zbynek Vecera, Pavel Mikuska, Pavel Coufalik, Lukas Capka, Kamil Krumal, Bohumil Docekal, Vladimir Holan, Miroslav Machala, Jan Topinka

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Circulating Small Noncoding RNAs Have Specific Expression Patterns in Plasma and Extracellular Vesicles in Myelodysplastic Syndromes and Are Predictive of Patient Outcome by Andrea Hrustincova, Zdenek Krejcik, David Kundrat, Katarina Szikszai, Monika Belickova, Pavla Pecherkova, Jiri Klema, Jitka Vesela, Monika Hruba, Jaroslav Cermak, Tereza Hrdinova, Matyas Krijt, Jan Valka, Anna Jonasova, Michaela Dostalova Merkerova

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Ordinary Gasoline Emissions Induce a Toxic Response in Bronchial Cells Grown at Air-Liquid Interface by Tereza Cervena, Michal Vojtisek-Lom, Kristyna Vrbova, Antonin Ambroz, Zuzana Novakova, Fatima Elzeinova, Michal Sima, Vit Beranek, Martin Pechout, David Macoun, Jiri Klema, Andrea Rossnerova, Miroslav Ciganek, Jan Topinka, Pavel Rossner

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DNA Methylation Profiles in a Group of Workers Occupationally Exposed to Nanoparticles by Andrea Rossnerova, Katerina Honkova, Daniela Pelclova, Vladimir Zdimal, Jaroslav A. Hubacek, Irena Chvojkova, Kristyna Vrbova, Pavel Rossner, Jan Topinka, Stepanka Vlckova, Zdenka Fenclova, Lucie Lischkova, Pavlina Klusackova, Jaroslav Schwarz, Jakub Ondracek, Lucie Ondrackova, Martin Kostejn, Jiri Klema, Stepanka Dvorackova

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Expression of circular RNAs in myelodysplastic neoplasms and their association with mutations in the splicing factor gene SF3B1 by Iva Trsova, Andrea Hrustincova, Zdenek Krejcik, David Kundrat, Aleš Holoubek, Karolina Staflova, Lucie Janstova, Sarka Vanikova, Katarina Szikszai, Jiri Klema, Petr Rysavy, Monika Belickova, Monika Kaisrlikova, Jitka Vesela, Jaroslav Cermak, Anna Jonasova, Jiri Dostal, Jan Fric, Jan Musil, Michaela Dostalova Merkerova

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Novel transcriptomic signatures associated with premature kidney allograft failureResearch in context by Petra Hruba, Jiri Klema, Anh Vu Le, Eva Girmanova, Petra Mrazova, Annick Massart, Dita Maixnerova, Ludek Voska, Gian Benedetto Piredda, Luigi Biancone, Ana Ramirez Puga, Nurhan Seyahi, Mehmet Sukru Sever, Laurent Weekers, Anja Muhfeld, Klemens Budde, Bruno Watschinger, Marius Miglinas, Ivan Zahradka, Marc Abramowicz, Daniel Abramowicz, Ondrej Viklicky

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