Regulatory network characterization in development: challenges and opportunities [version 1; referees: 2 approved] by Guangdun Peng, Jing-Dong J. Han

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3D chromatin structure changes during spermatogenesis and oogenesis by Shiqiang Zhang, Wanyu Tao, Jing-Dong J. Han

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Functional dissection of regulatory models using gene expression data of deletion mutants. by Jin'e Li, Yi Liu, Min Liu, Jing-Dong J Han

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Inter-nucleosomal communication between histone modifications for nucleosome phasing. by Weizhong Chen, Yi Liu, Shanshan Zhu, Guoyu Chen, Jing-Dong J Han

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CoCiter: an efficient tool to infer gene function by assessing the significance of literature co-citation. by Nan Qiao, Yi Huang, Hammad Naveed, Christopher D Green, Jing-Dong J Han

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Evolution of Alu Elements toward Enhancers by Ming Su, Dali Han, Jerome Boyd-Kirkup, Xiaoming Yu, Jing-Dong J. Han

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Transformer for one stop interpretable cell type annotation by Jiawei Chen, Hao Xu, Wanyu Tao, Zhaoxiong Chen, Yuxuan Zhao, Jing-Dong J. Han

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Systematic prediction of pharmacodynamic drug-drug interactions through protein-protein-interaction network. by Jialiang Huang, Chaoqun Niu, Christopher D Green, Lun Yang, Hongkang Mei, Jing-Dong J Han

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Impact of Dietary Interventions on Noncoding RNA Networks and mRNAs Encoding Chromatin-Related Factors by Christopher D. Green, Yi Huang, Xiaoyang Dou, Liu Yang, Yong Liu, Jing-Dong J. Han

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Immune Cell Types and Secreted Factors Contributing to Inflammation-to-Cancer Transition and Immune Therapy Response by Xingwei Chen, Chi Xu, Shengjun Hong, Xian Xia, Yaqiang Cao, Joseph McDermott, Yonglin Mu, Jing-Dong J. Han

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Classification and prediction of toxicity of chemicals using an automated phenotypic profiling of Caenorhabditis elegans by Shan Gao, Weiyang Chen, Yingxin Zeng, Haiming Jing, Nan Zhang, Matthew Flavel, Markandeya Jois, Jing-Dong J. Han, Bo Xian, Guojun Li

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Integrative genomic analysis of early neurogenesis reveals a temporal genetic program for differentiation and specification of preplate and Cajal-Retzius neurons. by Jia Li, Lei Sun, Xue-Liang Peng, Xiao-Ming Yu, Shao-Jun Qi, Zhi John Lu, Jing-Dong J Han, Qin Shen

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Tissue-specific profiling of age-dependent miRNAomic changes in Caenorhabditis elegans by Xueqing Wang, Quanlong Jiang, Hongdao Zhang, Zhidong He, Yuanyuan Song, Yifan Chen, Na Tang, Yifei Zhou, Yiping Li, Adam Antebi, Ligang Wu, Jing-Dong J. Han, Yidong Shen

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Identification of the proliferation/differentiation switch in the cellular network of multicellular organisms. by Kai Xia, Huiling Xue, Dong Dong, Shanshan Zhu, Jiamu Wang, Qingpeng Zhang, Lei Hou, Hua Chen, Ran Tao, Zheng Huang, Zheng Fu, Ye-Guang Chen, Jing-Dong J Han

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Inference of differentiation time for single cell transcriptomes using cell population reference data by Na Sun, Xiaoming Yu, Fang Li, Denghui Liu, Shengbao Suo, Weiyang Chen, Shirui Chen, Lu Song, Christopher D. Green, Joseph McDermott, Qin Shen, Naihe Jing, Jing-Dong J. Han

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The precursor of PI(3,4,5)P3 alleviates aging by activating daf-18(Pten) and independent of daf-16 by Dawei Shi, Xian Xia, Aoyuan Cui, Zhongxiang Xiong, Yizhen Yan, Jing Luo, Guoyu Chen, Yingying Zeng, Donghong Cai, Lei Hou, Joseph McDermott, Yu Li, Hong Zhang, Jing-Dong J. Han

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Dissecting the precise role of H3K9 methylation in crosstalk with DNA maintenance methylation in mammals by Qian Zhao, Jiqin Zhang, Ruoyu Chen, Lina Wang, Bo Li, Hao Cheng, Xiaoya Duan, Haijun Zhu, Wei Wei, Jiwen Li, Qihan Wu, Jing-Dong J. Han, Wenqiang Yu, Shaorong Gao, Guohong Li, Jiemin Wong

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A 3D Atlas of Hematopoietic Stem and Progenitor Cell Expansion by Multi-dimensional RNA-Seq Analysis by Yuanyuan Xue, Denghui Liu, Guizhong Cui, Yanyan Ding, Daosheng Ai, Suwei Gao, Yifan Zhang, Shengbao Suo, Xiaohan Wang, Peng Lv, Chunyu Zhou, Yizhou Li, Xingwei Chen, Guangdun Peng, Naihe Jing, Jing-Dong J. Han, Feng Liu

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A human circulating immune cell landscape in aging and COVID-19 by Yingfeng Zheng, Xiuxing Liu, Wenqing Le, Lihui Xie, He Li, Wen Wen, Si Wang, Shuai Ma, Zhaohao Huang, Jinguo Ye, Wen Shi, Yanxia Ye, Zunpeng Liu, Moshi Song, Weiqi Zhang, Jing-Dong J. Han, Juan Carlos Izpisua Belmonte, Chuanle Xiao, Jing Qu, Hongyang Wang, Guang-Hui Liu, Wenru Su

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Distinct biological ages of organs and systems identified from a multi-omics study by Chao Nie, Yan Li, Rui Li, Yizhen Yan, Detao Zhang, Tao Li, Zhiming Li, Yuzhe Sun, Hefu Zhen, Jiahong Ding, Ziyun Wan, Jianping Gong, Yanfang Shi, Zhibo Huang, Yiran Wu, Kaiye Cai, Yang Zong, Zhen Wang, Rong Wang, Min Jian, Xin Jin, Jian Wang, Huanming Yang, Jing-Dong J. Han, Xiuqing Zhang, Claudio Franceschi, Brian K. Kennedy, Xun Xu

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