HIV-1 molecular epidemiology in Guinea-Bissau, West Africa: origin, demography and migrations. by Joakim Esbjörnsson, Mattias Mild, Fredrik Månsson, Hans Norrgren, Patrik Medstrand

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Investigating SARS-CoV-2 Neutralising Antibody Response in Sheep by Milena Samojlović, João R. Mesquita, Sérgio Santos-Silva, Malin Neptin, Joakim Esbjörnsson

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The Role of Phylogenetics in Discerning HIV-1 Mixing among Vulnerable Populations and Geographic Regions in Sub-Saharan Africa: A Systematic Review by George M. Nduva, Jamirah Nazziwa, Amin S. Hassan, Eduard J. Sanders, Joakim Esbjörnsson

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Genetic characterization of human immunodeficiency virus type 1 transmission in the Middle East and North Africa by Malik Sallam, Gülşen Özkaya Şahin, Mikael Ingman, Anders Widell, Joakim Esbjörnsson, Patrik Medstrand

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Phylogenetic Characterization of HIV-1 Sub-Subtype A1 in Karachi, Pakistan by Uroosa Tariq, Jamirah Nazziwa, Sviataslau Sasinovich, Sharaf Ali Shah, Sadaf Naeem, Syed Hani Abidi, Joakim Esbjörnsson

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Intra-Patient Evolution of HIV-2 Molecular Properties by Angelica A. Palm, Joakim Esbjörnsson, Anders Kvist, Fredrik Månsson, Antonio Biague, Hans Norrgren, Marianne Jansson, Patrik Medstrand

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Decreasing prevalence of transmitted drug resistance among ART-naive HIV-1-infected patients in Iceland, 1996–2012 by Malik Sallam, Gülşen Özkaya Şahin, Hlynur Indriðason, Joakim Esbjörnsson, Arthur Löve, Anders Widell, Magnus Gottfreðsson, Patrik Medstrand

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HIV-1 subtype diversity, transmission networks and transmitted drug resistance amongst acute and early infected MSM populations from Coastal Kenya. by Amin S Hassan, Joakim Esbjörnsson, Elizabeth Wahome, Alexander Thiong'o, George N Makau, Mathew A Price, Eduard J Sanders

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The HIV care continuum and HIV-1 drug resistance among female sex workers: a key population in Guinea-Bissau by Jacob Lindman, Mamadu Aliu Djalo, Ansu Biai, Fredrik Månsson, Joakim Esbjörnsson, Marianne Jansson, Patrik Medstrand, Hans Norrgren, the SWEGUB CORE group

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Prevalence of HIV-1 pretreatment drug resistance among treatment naïve pregnant women in Bissau, Guinea Bissau. by Sten Wilhelmson, Fredrik Månsson, Jacob Lopatko Lindman, Ansu Biai, Joakim Esbjörnsson, Hans Norrgren, Marianne Jansson, Patrik Medstrand, SWEGUB CORE group

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Exposure to common infections may shape basal immunity and potentially HIV-1 acquisition amongst a high-risk population in Coastal Kenya by Lynn Fwambah, Lynn Fwambah, Cheryl Andisi, Claire Streatfield, Rachel Bromell, Jonathan Hare, Jonathan Hare, Joakim Esbjörnsson, Joakim Esbjörnsson, Thumbi Ndung’u, Thumbi Ndung’u, Thumbi Ndung’u, Thumbi Ndung’u, Eduard J. Sanders, Eduard J. Sanders, Eduard J. Sanders, Amin S. Hassan, Amin S. Hassan, Eunice Nduati, Eunice Nduati

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Phylogenetic and Drug-Resistance Analysis of HIV-1 Sequences From an Extensive Paediatric HIV-1 Outbreak in Larkana, Pakistan by Syed Hani Abidi, George Makau Nduva, George Makau Nduva, Dilsha Siddiqui, Wardah Rafaqat, Syed Faisal Mahmood, Amna Rehana Siddiqui, Apsara Ali Nathwani, Aneeta Hotwani, Sharaf Ali Shah, Sikander Memon, Saqib Ali Sheikh, Palwasha Khan, Joakim Esbjörnsson, Joakim Esbjörnsson, Rashida Abbas Ferrand, Rashida Abbas Ferrand, Fatima Mir

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Molecular characterization of HCV in a Swedish county over 8 years (2002–2009) reveals distinct transmission patterns by Josefine Ederth, Camilla Jern, Helené Norder, Lars Magnius, Erik Alm, Björg Kleverman Rognsvåg, Carl-Gustaf Sundin, Mia Brytting, Joakim Esbjörnsson, Mattias Mild

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Interferon Alpha-Inducible Protein 27 Expression Is Linked to Disease Severity in Chronic Infection of Both HIV-1 and HIV-2 by Angelica A. Palm, Srinivas Veerla, Jacob Lindman, Per-Erik Isberg, Emil Johansson, Emil Johansson, Antonio Biague, Fredrik Månsson, Hans Norrgren, Joakim Esbjörnsson, Patrik Medstrand, Marianne Jansson

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Evolutionary analysis of the Chikungunya virus epidemic in Mexico reveals intra-host mutational hotspots in the E1 protein. by José Esteban Muñoz-Medina, Miguel Antonio Garcia-Knight, Alejandro Sanchez-Flores, Irma Eloísa Monroy-Muñoz, Ricardo Grande, Joakim Esbjörnsson, Clara Esperanza Santacruz-Tinoco, César Raúl González-Bonilla

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HIV-2 as a model to identify a functional HIV cure by Joakim Esbjörnsson, Marianne Jansson, Sanne Jespersen, Fredrik Månsson, Bo L. Hønge, Jacob Lindman, Candida Medina, Zacarias J. da Silva, Hans Norrgren, Patrik Medstrand, Sarah L. Rowland-Jones, Christian Wejse

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Low Postseroconversion CD4⁺ T-cell Level Is Associated with Faster Disease Progression and Higher Viral Evolutionary Rate in HIV-2 Infection by Angelica A. Palm, Philippe Lemey, Marianne Jansson, Fredrik Månsson, Anders Kvist, Zsófia Szojka, Antonio Biague, Zacarias José da Silva, Sarah L. Rowland-Jones, Hans Norrgren, Joakim Esbjörnsson, Patrik Medstrand

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HIV-2 mediated effects on target and bystander cells induce plasma proteome remodeling by Emil Johansson, Jamirah Nazziwa, Eva Freyhult, Mun-Gwan Hong, Jacob Lindman, Malin Neptin, Sara Karlson, Melinda Rezeli, Antonio J. Biague, Patrik Medstrand, Fredrik Månsson, Hans Norrgren, Joakim Esbjörnsson, Marianne Jansson

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Phylogeographic Assessment Reveals Geographic Sources of HIV-1 Dissemination Among Men Who Have Sex With Men in Kenya by George M. Nduva, George M. Nduva, Frederick Otieno, Joshua Kimani, Joshua Kimani, Lyle R. McKinnon, Lyle R. McKinnon, Lyle R. McKinnon, Francois Cholette, Francois Cholette, Paul Sandstrom, Susan M. Graham, Susan M. Graham, Matt A. Price, Matt A. Price, Adrian D. Smith, Robert C. Bailey, Robert C. Bailey, Amin S. Hassan, Amin S. Hassan, Joakim Esbjörnsson, Joakim Esbjörnsson, Eduard J. Sanders, Eduard J. Sanders

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Hierarchical Clustering and Trajectory Analyses Reveal Viremia-Independent B-Cell Perturbations in HIV-2 Infection by Emil Johansson, Priscilla F. Kerkman, Lydia Scharf, Jacob Lindman, Zsófia I. Szojka, Fredrik Månsson, Antonio Biague, Patrik Medstrand, Hans Norrgren, Marcus Buggert, Annika C. Karlsson, Mattias N. E. Forsell, Joakim Esbjörnsson, Marianne Jansson, the SWEGUB CORE Group

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