Genetic resources for methane production from biomass described with gene ontology by Endang ePurwantini, Trudy eTorto-Alalibo, Jane eLomax, João C. Setubal, João C. Setubal, Brett M. Tyler, Brett M. Tyler, Biswarup eMukhopadhyay, Biswarup eMukhopadhyay

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Analysis of twelve genomes of the bacterium Kerstersia gyiorum from brown-throated sloths (Bradypus variegatus), the first from a non-human host by Dennis Carhuaricra-Huaman, Irys H.L. Gonzalez, Patricia L. Ramos, Aline M. da Silva, Joao C. Setubal

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Longitudinal 16S rRNA gut microbiota data of infant triplets show partial susceptibility to host genetics by Ondina Palmeira, Larissa R.B. Matos, Michel S. Naslavsky, Heloisa M.S. Bueno, Júlia P. Soler, João C. Setubal, Mayana Zatz

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Impact of phages on soil bacterial communities and nitrogen availability under different assembly scenarios by Lucas P. P. Braga, Aymé Spor, Witold Kot, Marie-Christine Breuil, Lars H. Hansen, João C. Setubal, Laurent Philippot

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Chromatin Landscape Distinguishes the Genomic Loci of Hundreds of Androgen-Receptor-Associated LincRNAs From the Loci of Non-associated LincRNAs by Lucas F. daSilva, Lucas F. daSilva, Felipe C. Beckedorff, Felipe C. Beckedorff, Ana C. Ayupe, Murilo S. Amaral, Murilo S. Amaral, Vinícius Mesel, Alexandre Videira, Alexandre Videira, Eduardo M. Reis, João C. Setubal, João C. Setubal, Sergio Verjovski-Almeida, Sergio Verjovski-Almeida

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Bacterial Diversification in the Light of the Interactions with Phages: The Genetic Symbionts and Their Role in Ecological Speciation by Lucas P. P. Braga, Lucas P. P. Braga, Shannon M. Soucy, Deyvid E. Amgarten, Aline M. da Silva, João C. Setubal

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Next-generation phage display: integrating and comparing available molecular tools to enable cost-effective high-throughput analysis. by Emmanuel Dias-Neto, Diana N Nunes, Ricardo J Giordano, Jessica Sun, Gregory H Botz, Kuan Yang, João C Setubal, Renata Pasqualini, Wadih Arap

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An anomalous type IV secretion system in Rickettsia is evolutionarily conserved. by Joseph J Gillespie, Nicole C Ammerman, Sheila M Dreher-Lesnick, M Sayeedur Rahman, Micah J Worley, Joao C Setubal, Bruno S Sobral, Abdu F Azad

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Genomic Characterization of <i>Salmonella</i> Typhimurium Isolated from Guinea Pigs with Salmonellosis in Lima, Peru by Dennis E. Carhuaricra Huaman, Luis R. Luna Espinoza, Carmen L. Rodríguez Cueva, Carla G. Duran Gonzales, Raúl H. Rosadio Alcántara, João C. Setubal, Lenin Maturrano Hernández

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Phylogenomics of Xanthomonas field strains infecting pepper and tomato reveals diversity in effector repertoires and identifies determinants of host specificity by Allison R Schwartz, Neha ePotnis, Sujan eTimilsina, Mark eWilson, José ePatane, Joaquim eMartins, Gerald V Minsavage, Douglas eDahlbeck, Alina eAkhunova, Nalvo eAlmeida, Gary E Vallad, Jeri D Barak, Frank F White, Sally A Miller, David eRitchie, Erica eGoss, Rebecca S Bart, João C Setubal, João C Setubal, Jeffrey B Jones, Brian J Staskawicz

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The Complete Genome Sequence of ‘Candidatus Liberibacter americanus’, Associated with Citrus Huanglongbing by Nelson A. Wulff, Shujian Zhang, João C. Setubal, Nalvo F. Almeida, Elaine C. Martins, Ricardo Harakava, Dibyendu Kumar, Luiz Thiberio Rangel, Xavier Foissac, Joseph M. Bové, Dean W. Gabriel

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Schistosoma mansoni Egg, Adult Male and Female Comparative Gene Expression Analysis and Identification of Novel Genes by RNA-Seq. by Letícia Anderson, Murilo S Amaral, Felipe Beckedorff, Lucas F Silva, Bianca Dazzani, Katia C Oliveira, Giulliana T Almeida, Monete R Gomes, David S Pires, João C Setubal, Ricardo DeMarco, Sergio Verjovski-Almeida

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Comparative Genomics of <i>Xylella fastidiosa</i> Explores Candidate Host-Specificity Determinants and Expands the Known Repertoire of Mobile Genetic Elements and Immunity Systems by Guillermo Uceda-Campos, Oseias R. Feitosa-Junior, Caio R. N. Santiago, Paulo M. Pierry, Paulo A. Zaini, Wesley O. de Santana, Joaquim Martins-Junior, Deibs Barbosa, Luciano A. Digiampietri, João C. Setubal, Aline M. da Silva

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A transcriptome-based signature of pathological angiogenesis predicts breast cancer patient survival. by Rodrigo Guarischi-Sousa, Jhonatas S Monteiro, Lilian C Alecrim, Jussara S Michaloski, Laura B Cardeal, Elisa N Ferreira, Dirce M Carraro, Diana N Nunes, Emmanuel Dias-Neto, Jüri Reimand, Paul C Boutros, João C Setubal, Ricardo J Giordano

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Inhibition of histone methyltransferase EZH2 in Schistosoma mansoni in vitro by GSK343 reduces egg laying and decreases the expression of genes implicated in DNA replication and no... by Adriana S A Pereira, Murilo S Amaral, Elton J R Vasconcelos, David S Pires, Huma Asif, Lucas F daSilva, David A Morales-Vicente, Vitor C Carneiro, Claudia B Angeli, Giuseppe Palmisano, Marcelo R Fantappie, Raymond J Pierce, João C Setubal, Sergio Verjovski-Almeida

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Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses by José S. L. Patané, Joaquim Martins, Luiz Thiberio Rangel, José Belasque, Luciano A. Digiampietri, Agda Paula Facincani, Rafael Marini Ferreira, Fabrício José Jaciani, Yunzeng Zhang, Alessandro M. Varani, Nalvo F. Almeida, Nian Wang, Jesus A. Ferro, Leandro M. Moreira, João C. Setubal

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Proteomics-based identification of differentially abundant proteins reveals adaptation mechanisms of Xanthomonas citri subsp. citri during Citrus sinensis infection by Leandro M. Moreira, Márcia R. Soares, Agda P. Facincani, Cristiano B. Ferreira, Rafael M. Ferreira, Maria I. T. Ferro, Fábio C. Gozzo, Érica B. Felestrino, Renata A. B. Assis, Camila Carrião M. Garcia, João C. Setubal, Jesus A. Ferro, Julio C.F. de Oliveira

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Maternal supplementation with a synbiotic has distinct outcomes on offspring gut microbiota formation in A/J and C57BL/6 mice, differentially affecting airway inflammatory cell inf... by Claudio Fukumori, Mateus B. Casaro, Andrew M. Thomas, Eduardo Mendes, Willian R. Ribeiro, Amanda R. Crisma, Gilson M. Murata, Bruna Bizzarro, Emmanuel Dias-Neto, Joao C. Setubal, Maria A. Oliveira, Wothan Tavares-de-Lima, Rui Curi, Silvana Bordin, Patricia Sartorelli, Caroline M. Ferreira

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A Draft Genome Sequence of Pseudomonas syringae pv. tomato T1 Reveals a Type III Effector Repertoire Significantly Divergent from That of Pseudomonas syringae pv. tomato DC3000 by Nalvo F. Almeida, Shuangchun Yan, Magdalen Lindeberg, David J. Studholme, David J. Schneider, Bradford Condon, Haijie Liu, Carlos J. Viana, Andrew Warren, Clive Evans, Eric Kemen, Dan MacLean, Aurelie Angot, Gregory B. Martin, Jonathan D. Jones, Alan Collmer, Joao C. Setubal, Boris A. Vinatzer

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Rickettsia phylogenomics: unwinding the intricacies of obligate intracellular life. by Joseph J Gillespie, Kelly Williams, Maulik Shukla, Eric E Snyder, Eric K Nordberg, Shane M Ceraul, Chitti Dharmanolla, Daphne Rainey, Jeetendra Soneja, Joshua M Shallom, Nataraj Dongre Vishnubhat, Rebecca Wattam, Anjan Purkayastha, Michael Czar, Oswald Crasta, Joao C Setubal, Abdu F Azad, Bruno S Sobral

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