The re-emergence of H1N1 influenza virus in 1977: a cautionary tale for estimating divergence times using biologically unrealistic sampling dates. by Joel O Wertheim

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A challenge to the ancient origin of SIVagm based on African green monkey mitochondrial genomes. by Joel O Wertheim, Michael Worobey

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Dating the age of the SIV lineages that gave rise to HIV-1 and HIV-2. by Joel O Wertheim, Michael Worobey

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Incorporating metadata in HIV transmission network reconstruction: A machine learning feasibility assessment. by Sepideh Mazrouee, Susan J Little, Joel O Wertheim

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Using HIV transmission networks to investigate community effects in HIV prevention trials. by Joel O Wertheim, Sergei L Kosakovsky Pond, Susan J Little, Victor De Gruttola

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Detecting individual sites subject to episodic diversifying selection. by Ben Murrell, Joel O Wertheim, Sasha Moola, Thomas Weighill, Konrad Scheffler, Sergei L Kosakovsky Pond

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Phylogeographic analysis reveals an ancient East African origin of human herpes simplex virus 2 dispersal out-of-Africa by Jennifer L. Havens, Sébastien Calvignac-Spencer, Kevin Merkel, Sonia Burrel, David Boutolleau, Joel O. Wertheim

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Impact of molecular sequence data completeness on HIV cluster detection and a network science approach to enhance detection by Sepideh Mazrouee, Camden J. Hallmark, Ricardo Mora, Natascha Del Vecchio, Rocio Carrasco Hernandez, Michelle Carr, Marlene McNeese, Kayo Fujimoto, Joel O. Wertheim

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Analysis of Hepatitis B Virus Genotype D in Greenland Suggests the Presence of a Novel Quasi-Subgenotype by Adriano de Bernardi Schneider, Carla Osiowy, Reilly Hostager, Henrik Krarup, Henrik Krarup, Henrik Krarup, Malene Børresen, Yasuhito Tanaka, Taylor Morriseau, Joel O. Wertheim

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Social and Genetic Networks of HIV-1 Transmission in New York City. by Joel O Wertheim, Sergei L Kosakovsky Pond, Lisa A Forgione, Sanjay R Mehta, Ben Murrell, Sharmila Shah, Davey M Smith, Konrad Scheffler, Lucia V Torian

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Tracking SARS-COV-2 variants using Nanopore sequencing in Ukraine in 2021 by Anna Yakovleva, Ganna Kovalenko, Matthew Redlinger, Mariia G. Liulchuk, Eric Bortz, Viktoria I. Zadorozhna, Alla M. Scherbinska, Joel O. Wertheim, Ian Goodfellow, Luke Meredith, Tetyana I. Vasylyeva

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Author Correction: Tracking SARS-COV-2 variants using Nanopore sequencing in Ukraine in 2021 by Anna Yakovleva, Ganna Kovalenko, Matthew Redlinger, Mariia G. Liulchuk, Eric Bortz, Viktoria I. Zadorozhna, Alla M. Scherbinska, Joel O. Wertheim, Ian Goodfellow, Luke Meredith, Tetyana I. Vasylyeva

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Establishing a framework towards monitoring HCV microelimination among men who have sex with men living with HIV in Germany: A modeling analysis. by Lara K Marquez, Patrick Ingiliz, Christoph Boesecke, Ivanka Krznaric, Knud Schewe, Thomas Lutz, Stefan Mauss, Stefan Christensen, Jürgen K Rockstroh, Sonia Jain, Feng He, Joel O Wertheim, Natasha K Martin

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Establishing a framework towards monitoring HCV microelimination among men who have sex with men living with HIV in Germany: A modeling analysis by Lara K. Marquez, Patrick Ingiliz, Christoph Boesecke, Ivanka Krznaric, Knud Schewe, Thomas Lutz, Stefan Mauss, Stefan Christensen, Jürgen K. Rockstroh, Sonia Jain, Feng He, Joel O. Wertheim, Natasha K. Martin

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HIV Transmission Networks in the San Diego–Tijuana Border Region by Sanjay R. Mehta, Joel O. Wertheim, Kimberly C. Brouwer, Karla D. Wagner, Antoine Chaillon, Steffanie Strathdee, Thomas L. Patterson, Maria G. Rangel, Mlenka Vargas, Ben Murrell, Richard Garfein, Susan J. Little, Davey M. Smith

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Methodological synthesis of Bayesian phylodynamics, HIV-TRACE, and GEE: HIV-1 transmission epidemiology in a racially/ethnically diverse Southern U.S. context by Kayo Fujimoto, Justin Bahl, Joel O. Wertheim, Natascha Del Vecchio, Joseph T. Hicks, Lambodhar Damodaran, Camden J. Hallmark, Richa Lavingia, Ricardo Mora, Michelle Carr, Biru Yang, John A. Schneider, Lu-Yu Hwang, Marlene McNeese

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Author Correction: Methodological synthesis of Bayesian phylodynamics, HIV-TRACE, and GEE: HIV-1 transmission epidemiology in a racially/ethnically diverse Southern U.S. context by Kayo Fujimoto, Justin Bahl, Joel O. Wertheim, Natascha Del Vecchio, Joseph T. Hicks, Lambodhar Damodaran, Camden J. Hallmark, Richa Lavingia, Ricardo Mora, Michelle Carr, Biru Yang, John A. Schneider, Lu-Yu Hwang, Marlene McNeese

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Increasing Capacity to Detect Clusters of Rapid HIV Transmission in Varied Populations—United States by Alexandra M. Oster, Nivedha Panneer, Sheryl B. Lyss, R. Paul McClung, Meg Watson, Neeraja Saduvala, M. Cheryl Bañez Ocfemia, Laurie Linley, William M. Switzer, Joel O. Wertheim, Ellsworth Campbell, Angela L. Hernandez, Anne Marie France

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Hepatitis C Virus in people with experience of injection drug use following their displacement to Southern Ukraine before 2020 by Anna Yakovleva, Ganna Kovalenko, Matthew Redlinger, Pavlo Smyrnov, Olga Tymets, Anna Korobchuk, Lyudmyla Kotlyk, Anna Kolodiazieva, Anna Podolina, Svitlana Cherniavska, Petro Antonenko, Steffanie A. Strathdee, Samuel R. Friedman, Ian Goodfellow, Joel O. Wertheim, Eric Bortz, Luke Meredith, Tetyana I. Vasylyeva

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Evolution and spread of Venezuelan equine encephalitis complex alphavirus in the Americas. by Naomi L Forrester, Joel O Wertheim, Vivian G Dugan, Albert J Auguste, David Lin, A Paige Adams, Rubing Chen, Rodion Gorchakov, Grace Leal, Jose G Estrada-Franco, Jyotsna Pandya, Rebecca A Halpin, Kumar Hari, Ravi Jain, Timothy B Stockwell, Suman R Das, David E Wentworth, Martin D Smith, Sergei L Kosakovsky Pond, Scott C Weaver

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