Dynamic networks from hierarchical bayesian graph clustering. by Yongjin Park, Cristopher Moore, Joel S Bader

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Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps. by Hailiang Huang, Bruno M Jedynak, Joel S Bader

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Priors, population sizes, and power in genome-wide hypothesis tests by Jitong Cai, Jianan Zhan, Dan E. Arking, Joel S. Bader

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RNA interference analysis of Legionella in Drosophila cells: exploitation of early secretory apparatus dynamics. by Marion S Dorer, Donald Kirton, Joel S Bader, Ralph R Isberg

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Angiogenesis interactome and time course microarray data reveal the distinct activation patterns in endothelial cells. by Liang-Hui Chu, Esak Lee, Joel S Bader, Aleksander S Popel

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Fast association tests for genes with FAST. by Pritam Chanda, Hailiang Huang, Dan E Arking, Joel S Bader

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The housekeeping gene hypoxanthine guanine phosphoribosyltransferase (HPRT) regulates multiple developmental and metabolic pathways of murine embryonic stem cell neuronal different... by Tae Hyuk Kang, Yongjin Park, Joel S Bader, Theodore Friedmann

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Gene-based tests of association. by Hailiang Huang, Pritam Chanda, Alvaro Alonso, Joel S Bader, Dan E Arking

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Between-tumor and within-tumor heterogeneity in invasive potential. by Veena Padmanaban, Yohannes Tsehay, Kevin J Cheung, Andrew J Ewald, Joel S Bader

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Analysis of VEGF--a regulated gene expression in endothelial cells to identify genes linked to angiogenesis. by Corban G Rivera, Sofie Mellberg, Lena Claesson-Welsh, Joel S Bader, Aleksander S Popel

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Genetic Determinants of Intrinsic Antibiotic Tolerance in Mycobacterium avium by William M. Matern, Harley Parker, Carina Danchik, Leah Hoover, Joel S. Bader, Petros C. Karakousis

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Systems Biology-Based Identification of <named-content content-type="genus-species">Mycobacterium tuberculosis</named-content> Persistence Genes in Mouse Lungs by Noton K. Dutta, Nirmalya Bandyopadhyay, Balaji Veeramani, Gyanu Lamichhane, Petros C. Karakousis, Joel S. Bader

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Deficiency of the Novel Exopolyphosphatase Rv1026/PPX2 Leads to Metabolic Downshift and Altered Cell Wall Permeability in <named-content content-type="genus-species">Mycobacterium... by Yu-Min Chuang, Nirmalya Bandyopadhyay, Dalin Rifat, Harvey Rubin, Joel S. Bader, Petros C. Karakousis

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Gene Enrichment Analysis Reveals Major Regulators of Mycobacterium tuberculosis Gene Expression in Two Models of Antibiotic Tolerance by William M. Matern, William M. Matern, Dalin Rifat, Joel S. Bader, Petros C. Karakousis, Petros C. Karakousis

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Functional Whole Genome Screen of Nutrient-Starved <i>Mycobacterium tuberculosis</i> Identifies Genes Involved in Rifampin Tolerance by William M. Matern, Harley T. Harris, Carina Danchik, Marissa McDonald, Gopi Patel, Aashish Srivastava, Thomas R. Ioerger, Joel S. Bader, Petros C. Karakousis

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Lesion-Specific Immune Response in Granulomas of Patients with Pulmonary Tuberculosis: A Pilot Study. by Selvakumar Subbian, Liana Tsenova, Mi-Jeong Kim, Helen C Wainwright, Annalie Visser, Nirmalya Bandyopadhyay, Joel S Bader, Petros C Karakousis, Gabriele B Murrmann, Linda-Gail Bekker, David G Russell, Gilla Kaplan

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Heterozygous diploid and interspecies SCRaMbLEing by Michael J. Shen, Yi Wu, Kun Yang, Yunxiang Li, Hui Xu, Haoran Zhang, Bing-Zhi Li, Xia Li, Wen-Hai Xiao, Xiao Zhou, Leslie A. Mitchell, Joel S. Bader, Yingjin Yuan, Jef D. Boeke

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Morphology-guided transcriptomic analysis of human pancreatic cancer organoids reveals microenvironmental signals that enhance invasion by Yea Ji Jeong, Hildur Knutsdottir, Fatemeh Shojaeian, Michael G. Lerner, Maria F. Wissler, Elodie Henriet, Tammy Ng, Shalini Datta, Bernat Navarro-Serer, Peter Chianchiano, Benedict Kinny-Köster, Jacquelyn W. Zimmerman, Genevieve Stein-O’Brien, Matthias M. Gaida, James R. Eshleman, Ming-Tseh Lin, Elana J. Fertig, Andrew J. Ewald, Joel S. Bader, Laura D. Wood

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Protein synthesis inhibitor omacetaxine is effective against hepatocellular carcinoma by Ling Li, Gilad Halpert, Michael G. Lerner, Haijie Hu, Peter Dimitrion, Matthew J. Weiss, Jin He, Benjamin Philosophe, Richard Burkhart, William R. Burns, Russell N. Wesson, Andrew MacGregor Cameron, Christopher L. Wolfgang, Christos Georgiades, Satomi Kawamoto, Nilofer S. Azad, Mark Yarchoan, Stephen J. Meltzer, Kiyoko Oshima, Laura M. Ensign, Joel S. Bader, Florin M. Selaru

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Next-generation large-scale binary protein interaction network for Drosophila melanogaster by Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr

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