Core genome multilocus sequence typing scheme for Bacillus cereus group bacteria by Tourasse, NJ, Jolley, KA, Kolstø, A-B, Økstad, OA

Identifying Neisseria species by use of the 50S ribosomal protein L6 (rplF) gene by Bennett, JS, Jolley, KA, Harrison, OB, Maiden, MCJ, Watkins, ER

Plasmids in Neisseria gonorrhoeae are associated with distinct lineages and economic status of their country of origin by Cehovin, A, Jolley, KA, Maiden, MCJ, Harrison, OB, Tang, CM

Association of Neisseria gonorrhoeae plasmids with distinct lineages and the economic status of their country of origin by Cehovin, A, Jolley, KA, Maiden, MCJ, Harrison, OB, Tang, CM

Ribosomal MLST nucleotide identity (rMLST-NI), a rapid bacterial species identification method: application to Klebsiella and Raoultella genomic species validation by Bray, JE, Correia, AP, Varga, M, Jolley, KA, Maiden, M, Rodrigues, CMC

A dual barcoding approach to bacterial strain nomenclature: Genomic taxonomy of Klebsiella pneumoniae strains by Hennart, M, Guglielmini, J, Bridel, S, Maiden, MCJ, Jolley, KA, Criscuolo, A, Brisse, S

There are three major Neisseria gonorrhoeae β-lactamase plasmid variants which are associated with specific lineages and carry distinct TEM alleles by Elsener, TA, Jolley, KA, Sanders, E, Maiden, MCJ, Cehovin, A, Tang, CM

Development of the Pneumococcal Genome Library, a core genome multilocus sequence typing scheme, and a taxonomic life identification number barcoding system to investigate and defi... by Jansen van Rensburg, MJ, Berger, DJ, Fohrmann, A, Bray, JE, Jolley, KA, Maiden, MCJ, Brueggemann, AB

Core-genome multilocus sequence typing for epidemiological and evolutionary analyses of phytopathogenicXanthomonas citri by Ragupathy, R, Jolley, KA, Zamuner, C, Jones, JB, Redfern, J, Behlau, F, Ferreira, H, Enright, MC

Establishment of a publicly available core genome multilocus sequence typing scheme for Clostridium perfringens by Abdel-Glil, MY, Thomas, P, Linde, J, Jolley, KA, Harmsen, D, Wieler, LH, Neubauer, H, Seyboldt, C

High diversity of invasive Haemophilus influenzae isolates in France and the emergence of resistance to third generation cephalosporins by alteration of ftsI gene. by Deghmane, A-E, Hong, E, Chehboub, S, Terrade, A, Falguières, M, Sort, M, Harrison, O, Jolley, KA, Taha, M-K

A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies by Bridel, S, Bouchez, V, Brancotte, B, Hauck, S, Armatys, N, Landier, A, Mühle, E, Guillot, S, Toubiana, J, Maiden, MCJ, Jolley, KA, Brisse, S

A whole genome-based gene-by-gene typing system for standardised high resolution strain typing of Bacillus anthracis by Abdel-Glil, MY, Chiaverini, A, Garofolo, G, Fasanella, A, Parisi, A, Harmsen, D, Jolley, KA, Elschner, MC, Tomaso, H, Linde, J, Galante, D

Acinetobacter baumannii IC2 and IC5 isolates with co-existing blaOXA-143-like and blaOXA-72 and exhibiting strong biofilm formation in a Mexican hospital by Moreno-Manjón, J, Castillo-Ramírez, S, Jolley, KA, Maiden, MCJ, Gayosso-Vázquez, C, Fernández-Vázquez, JL, Mateo-Estrada, V, Giono-Cerezo, S, Alcántar-Curiel, MD

Penicillin binding protein substitutions co-occur with fluoroquinolone resistance in ‘epidemic’ lineages of multi drug-resistant Clostridioides difficile by Dingle, K, Freeman, J, Didelot, X, Quan, TP, Eyre, DW, Swann, J, Spittal, WD, Clark, EV, Jolley, KA, Walker, AS, Wilcox, MH, Crook, DW

Inferring Mycobacterium bovis transmission between cattle and badgers using isolates from the Randomised Badger Culling Trial by van Tonder, AJ, Thornton, MJ, Conlan, AJK, Jolley, KA, Goolding, L, Mitchell, AP, Dale, J, Palkopoulou, E, Hogarth, PJ, Hewinson, RG, Wood, JLN, Parkhill, J

Core genome multilocus sequence typing scheme for improved characterization and epidemiological surveillance of pathogenic Brucella by Abdel-Glil, MY, Thomas, P, Brandt, C, Melzer, F, Subbaiyan, A, Chaudhuri, P, Harmsen, D, Jolley, KA, Janowicz, A, Garofolo, G, Neubauer, H, Pletz, MW

Novel multilocus sequence typing and global sequence clustering schemes for characterizing the population diversity of Streptococcus mitis by Kalizang’oma, A, Kwambana-Adams, B, Chan, JM, Viswanath, A, Gori, A, Richard, D, Jolley, KA, Lees, J, Goldblatt, D, Beleza, S, Bentley, SD, Heyderman, RS, Chaguza, C

Genomic epidemiology of age-associated meningococcal lineages in national surveillance: an observational cohort study by Hill, DMC, Lucidarme, J, Gray, SJ, Newbold, LS, Ure, R, Brehony, C, Harrison, OB, Bray, JE, Jolley, KA, Bratcher, HB, Parkhill, J, Tang, CM, Borrow, R, Maiden, MCJ

Recombinational exchange of M-fibril and T-pilus genes generates extensive cell surface diversity in the global group A streptococcus population by Bessen, DE, Beall, BW, Hayes, A, Huang, W, DiChiara, JM, Velusamy, S, Tettelin, H, Jolley, KA, Fallon, JT, Chochua, S, Alobaidallah, MSA, Higgs, C, Barnett, TC, Steemson, JT, Proft, T, Davies, MR