On the Role of Bioinformatics and Data Science in Industrial Microbiome Applications by Bartholomeus van den Bogert, Jos Boekhorst, Walter Pirovano, Ali May

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Environmental microbes determine macrophage response towards saponin-induced inflammation in zebrafish larvae by Adrià López Nadal, Evelien Kidess, Jos Boekhorst, Geert Wiegertjes, Sylvia Brugman

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Resistome expansion in disease-associated human gut microbiomes by Simen Fredriksen, Stef de Warle, Peter van Baarlen, Jos Boekhorst, Jerry M. Wells

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Dietary calcium phosphate strongly impacts gut microbiome changes elicited by inulin and galacto-oligosaccharides consumption by Jori Fuhren, Markus Schwalbe, Jos Boekhorst, Christiane Rösch, Henk A. Schols, Michiel Kleerebezem

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Environmental and maternal factors shaping tonsillar microbiota development in piglets by Simen Fredriksen, Xiaonan Guan, Jos Boekhorst, Francesc Molist, Peter van Baarlen, Jerry M. Wells

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Prediction and validation of novel SigB regulon members in Bacillus subtilis and regulon structure comparison to Bacillales members by Kah Yen Claire Yeak, Jos Boekhorst, Michiel Wels, Tjakko Abee, Marjon H J Wells-Bennik

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Comparative genomics analysis of Streptococcus isolates from the human small intestine reveals their adaptation to a highly dynamic ecosystem. by Bartholomeus Van den Bogert, Jos Boekhorst, Ruth Herrmann, Eddy J Smid, Erwin G Zoetendal, Michiel Kleerebezem

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Endogenous small intestinal microbiome determinants of transient colonisation efficiency by bacteria from fermented dairy products: a randomised controlled trial by Edoardo Zaccaria, Tim Klaassen, Annick M. E. Alleleyn, Jos Boekhorst, Tamara Smokvina, Michiel Kleerebezem, Freddy J. Troost

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High-level heat resistance of spores of Bacillus amyloliquefaciens and Bacillus licheniformis results from the presence of a spoVA operon in a Tn1546 transposon. by Erwin M. Berendsen, Erwin M. Berendsen, Erwin M. Berendsen, Rosella A. Koning, Rosella A. Koning, Jos Boekhorst, Jos Boekhorst, Anne Jong, Anne Jong, Oscar P. Kuipers, Oscar P. Kuipers, Marjon H.J. Wells-Bennik, Marjon H.J. Wells-Bennik

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Detection and classification of the integrative conjugative elements of Lactococcus lactis by Simon van der Els, Reshtrie Sheombarsing, Thijn van Kempen, Michiel Wels, Jos Boekhorst, Peter A. Bron, Michiel Kleerebezem

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L. rhamnosus CNCM I-3690 survival, adaptation, and small bowel microbiome impact in human by Edoardo Zaccaria, Tim Klaassen, Annick M.E. Alleleyn, Jos Boekhorst, Christian Chervaux, Tamara Smokvina, Freddy J. Troost, Michiel Kleerebezem

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Charting host-microbe co-metabolism in skin aging and application to metagenomics data by Wynand Alkema, Jos Boekhorst, Robyn T. Eijlander, Steve Schnittger, Fini De Gruyter, Sabina Lukovac, Kurt Schilling, Guus A. M. Kortman

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Prebiotic Galacto-Oligosaccharides Impact Stool Frequency and Fecal Microbiota in Self-Reported Constipated Adults: A Randomized Clinical Trial by Marieke H. Schoemaker, Jeske H. J. Hageman, Dominique ten Haaf, Anita Hartog, Petra A. M. J. Scholtens, Jos Boekhorst, Arjen Nauta, Rolf Bos

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Genome sequence of Lactobacillus pentosus KCA1: vaginal isolate from a healthy premenopausal woman. by Kingsley C Anukam, Jean M Macklaim, Gregory B Gloor, Gregor Reid, Jos Boekhorst, Bernadet Renckens, Sacha A F T van Hijum, Roland J Siezen

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Mothers’ Breast Milk Composition and Their Respective Infant’s Gut Microbiota Differ between Five Distinct Rural and Urban Regions in Vietnam by Guus A. M. Kortman, Harro M. Timmerman, Anne Schaafsma, Eline Stoutjesdijk, Frits A. J. Muskiet, Nguyen V. Nhien, Els van Hoffen, Jos Boekhorst, Arjen Nauta

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Linking Bacillus cereus Genotypes and Carbohydrate Utilization Capacity. by Alicja K Warda, Roland J Siezen, Jos Boekhorst, Marjon H J Wells-Bennik, Anne de Jong, Oscar P Kuipers, Masja N Nierop Groot, Tjakko Abee

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Reliability of a participant-friendly fecal collection method for microbiome analyses: a step towards large sample size investigation by Joanna W. Szopinska, Raphaële Gresse, Saskia van der Marel, Jos Boekhorst, Sabina Lukovac, Iris van Swam, Barbara Franke, Harro Timmerman, Clara Belzer, Alejandro Arias Vasquez

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Stool energy density is positively correlated to intestinal transit time and related to microbial enterotypes by Jos Boekhorst, Naomi Venlet, Nicola Procházková, Mathias L. Hansen, Christian B. Lieberoth, Martin I. Bahl, Lotte Lauritzen, Oluf Pedersen, Tine Rask Licht, Michiel Kleerebezem, Henrik M. Roager

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Multi-Nutrient Fortified Dairy-Based Drink Reduces Anaemia without Observed Adverse Effects on Gut Microbiota in Anaemic Malnourished Nigerian Toddlers: A Randomised Dose–Response... by Adedotun J. Owolabi, Idowu O. Senbanjo, Kazeem A. Oshikoya, Jos Boekhorst, Robyn T. Eijlander, Guus A. M. Kortman, Jeske H. J. Hageman, Folake Samuel, Alida Melse-Boonstra, Anne Schaafsma

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Extensive Study of Breast Milk and Infant Growth: Protocol of the Cambridge Baby Growth and Breastfeeding Study (CBGS-BF) by Laurentya Olga, Clive J. Petry, Janna A. van Diepen, Philippa M. Prentice, Ieuan A. Hughes, Jacques Vervoort, Jos Boekhorst, Maciej Chichlowski, Gabriele Gross, David B. Dunger, Ken K. Ong

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