Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides by C. Alisha Quandt, Yanming Di, Justin Elser, Pankaj Jaiswal, Joseph W. Spatafora

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Cyclosporine Biosynthesis in <italic toggle="yes">Tolypocladium inflatum</italic> Benefits Fungal Adaptation to the Environment by Xiuqing Yang, Peng Feng, Ying Yin, Kathryn Bushley, Joseph W. Spatafora, Chengshu Wang

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Phylogenetic taxon definitions for Fungi, Dikarya, Ascomycota and Basidiomycota by David S. Hibbett, Meredith Blackwell, Timothy Y. James, Joseph W. Spatafora, John W. Taylor, Rytas Vilgalys

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Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locu... by Alija Bajro Mujic, Alan Kuo, Andrew Tritt, Anna Lipzen, Cindy Chen, Jenifer Johnson, Aditi Sharma, Kerrie Barry, Igor V. Grigoriev, Joseph W. Spatafora

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Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi by Ying Chang, D’Ann Rochon, Satoshi Sekimoto, Yan Wang, Mansi Chovatia, Laura Sandor, Asaf Salamov, Igor V. Grigoriev, Jason E. Stajich, Joseph W. Spatafora

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Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolu... by Javier F. Tabima, Ian A. Trautman, Ying Chang, Yan Wang, Stephen Mondo, Alan Kuo, Asaf Salamov, Igor V. Grigoriev, Jason E. Stajich, Joseph W. Spatafora

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Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum by Rodrigo A. Olarte, Jon Menke, Ying Zhang, Shawn Sullivan, Jason C. Slot, Yinyin Huang, Jonathan P. Badalamenti, Alisha C. Quandt, Joseph W. Spatafora, Kathryn E. Bushley

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The genome of tolypocladium inflatum: evolution, organization, and expression of the cyclosporin biosynthetic gene cluster. by Kathryn E Bushley, Rajani Raja, Pankaj Jaiswal, Jason S Cumbie, Mariko Nonogaki, Alexander E Boyd, C Alisha Owensby, Brian J Knaus, Justin Elser, Daniel Miller, Yanming Di, Kerry L McPhail, Joseph W Spatafora

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Herptile gut microbiomes: a natural system to study multi-kingdom interactions between filamentous fungi and bacteria by Lluvia Vargas-Gastélum, Alexander S. Romer, Marjan Ghotbi, Jason W. Dallas, N. Reed Alexander, Kylie C. Moe, Kerry L. McPhail, George F. Neuhaus, Leila Shadmani, Joseph W. Spatafora, Jason E. Stajich, Javier F. Tabima, Donald M. Walker

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Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi by Dániel G. Knapp, Julianna B. Németh, Kerrie Barry, Matthieu Hainaut, Bernard Henrissat, Jenifer Johnson, Alan Kuo, Joanne Hui Ping Lim, Anna Lipzen, Matt Nolan, Robin A. Ohm, László Tamás, Igor V. Grigoriev, Joseph W. Spatafora, László G. Nagy, Gábor M. Kovács

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Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation by Ole Christian Hagestad, Lingwei Hou, Jeanette H. Andersen, Espen H. Hansen, Bjørn Altermark, Chun Li, Eric Kuhnert, Russell J. Cox, Pedro W. Crous, Joseph W. Spatafora, Kathleen Lail, Mojgan Amirebrahimi, Anna Lipzen, Jasmyn Pangilinan, William Andreopoulos, Richard D. Hayes, Vivian Ng, Igor V. Grigoriev, Stephen A. Jackson, Thomas D. S. Sutton, Alan D. W. Dobson, Teppo Rämä

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Microfluidics and Metabolomics Reveal Symbiotic Bacterial–Fungal Interactions Between Mortierella elongata and Burkholderia Include Metabolite Exchange by Jessie K. Uehling, Jessie K. Uehling, Matthew R. Entler, Hannah R. Meredith, Hannah R. Meredith, Larry J. Millet, Larry J. Millet, Collin M. Timm, Jayde A. Aufrecht, Gregory M. Bonito, Nancy L. Engle, Jessy L. Labbé, Jessy L. Labbé, Mitchel J. Doktycz, Mitchel J. Doktycz, Mitchel J. Doktycz, Scott T. Retterer, Scott T. Retterer, Joseph W. Spatafora, Jason E. Stajich, Timothy J. Tschaplinski, Rytas J. Vilgalys

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Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned? by Andrii P. Gryganskyi, Jacob Golan, Anna Muszewska, Alexander Idnurm, Somayeh Dolatabadi, Stephen J. Mondo, Vira B. Kutovenko, Volodymyr O. Kutovenko, Michael T. Gajdeczka, Iryna M. Anishchenko, Julia Pawlowska, Ngoc Vinh Tran, Ingo Ebersberger, Kerstin Voigt, Yan Wang, Ying Chang, Teresa E. Pawlowska, Joseph Heitman, Rytas Vilgalys, Gregory Bonito, Gerald L. Benny, Matthew E. Smith, Nicole Reynolds, Timothy Y. James, Igor V. Grigoriev, Joseph W. Spatafora, Jason E. Stajich

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Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. by Robin A Ohm, Nicolas Feau, Bernard Henrissat, Conrad L Schoch, Benjamin A Horwitz, Kerrie W Barry, Bradford J Condon, Alex C Copeland, Braham Dhillon, Fabian Glaser, Cedar N Hesse, Idit Kosti, Kurt LaButti, Erika A Lindquist, Susan Lucas, Asaf A Salamov, Rosie E Bradshaw, Lynda Ciuffetti, Richard C Hamelin, Gert H J Kema, Christopher Lawrence, James A Scott, Joseph W Spatafora, B Gillian Turgeon, Pierre J G M de Wit, Shaobin Zhong, Stephen B Goodwin, Igor V Grigoriev

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Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum by Martina Peter, Annegret Kohler, Robin A. Ohm, Alan Kuo, Jennifer Krützmann, Emmanuelle Morin, Matthias Arend, Kerrie W. Barry, Manfred Binder, Cindy Choi, Alicia Clum, Alex Copeland, Nadine Grisel, Sajeet Haridas, Tabea Kipfer, Kurt LaButti, Erika Lindquist, Anna Lipzen, Renaud Maire, Barbara Meier, Sirma Mihaltcheva, Virginie Molinier, Claude Murat, Stefanie Pöggeler, C. Alisha Quandt, Christoph Sperisen, Andrew Tritt, Emilie Tisserant, Pedro W. Crous, Bernard Henrissat, Uwe Nehls, Simon Egli, Joseph W. Spatafora, Igor V. Grigoriev, Francis M. Martin

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Correction: Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Fungi. by Robin A. Ohm, Nicolas Feau, Bernard Henrissat, Conrad L. Schoch, Benjamin A. Horwitz, Kerrie W. Barry, Bradford J. Condon, Alex C. Copeland, Braham Dhillon, Fabian Glaser, Cedar N. Hesse, Idit Kosti, Kurt LaButti, Erika A. Lindquist, Susan Lucas, Asaf A. Salamov, Rosie E. Bradshaw, Lynda Ciuffetti, Richard C. Hamelin, Gert H. J. Kema, Christopher Lawrence, James A. Scott, Joseph W. Spatafora, B. Gillian Turgeon, Pierre J. G. M. de Wit, Shaobin Zhong, Stephen B. Goodwin, Igor V. Grigoriev

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Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces by Jeffrey J. Czajka, Jeffrey J. Czajka, Yichao Han, Yichao Han, Joonhoon Kim, Joonhoon Kim, Joonhoon Kim, Stephen J. Mondo, Stephen J. Mondo, Stephen J. Mondo, Beth A. Hofstad, Beth A. Hofstad, AnaLaura Robles, AnaLaura Robles, Sajeet Haridas, Robert Riley, Kurt LaButti, Jasmyn Pangilinan, William Andreopoulos, Anna Lipzen, Juying Yan, Mei Wang, Vivian Ng, Igor V. Grigoriev, Igor V. Grigoriev, Joseph W. Spatafora, Jon K. Magnuson, Jon K. Magnuson, Jon K. Magnuson, Scott E. Baker, Scott E. Baker, Scott E. Baker, Kyle R. Pomraning, Kyle R. Pomraning

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