VEBA: a modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes by Josh L. Espinoza, Chris L. Dupont

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Transcriptomic Study of Substrate-Specific Transport Mechanisms for Iron and Carbon in the Marine Copiotroph <named-content content-type="genus-species">Alteromonas macleodii</name... by Lauren E. Manck, Josh L. Espinoza, Christopher L. Dupont, Katherine A. Barbeau

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Influence of Substrate Concentration on the Culturability of Heterotrophic Soil Microbes Isolated by High-Throughput Dilution-to-Extinction Cultivation by Ryan P. Bartelme, Joy M. Custer, Christopher L. Dupont, Josh L. Espinoza, Manolito Torralba, Banafshe Khalili, Paul Carini

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Posttranscriptional Control of the Stem Cell and Neurogenic Programs by the Nonsense-Mediated RNA Decay Pathway by Chih H. Lou, Ada Shao, Eleen Y. Shum, Josh L. Espinoza, Lulu Huang, Rachid Karam, Miles F. Wilkinson

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Genotypic diversity and unrecognized antifungal resistance among populations of Candida glabrata from positive blood cultures by Hassan Badrane, Shaoji Cheng, Christopher L. Dupont, Binghua Hao, Eileen Driscoll, Kristin Morder, Guojun Liu, Anthony Newbrough, Giuseppe Fleres, Drishti Kaul, Josh L. Espinoza, Cornelius J. Clancy, M. Hong Nguyen

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Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach. by Josh L Espinoza, Chris L Dupont, Aubrie O'Rourke, Sinem Beyhan, Pavel Morales, Amy Spoering, Kirsten J Meyer, Agnes P Chan, Yongwook Choi, William C Nierman, Kim Lewis, Karen E Nelson

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A Silent Operon of Photorhabdus luminescens Encodes a Prodrug Mimic of GTP by Negar Shahsavari, Boyuan Wang, Yu Imai, Miho Mori, Sangkeun Son, Libang Liang, Nils Böhringer, Sylvie Manuse, Michael F. Gates, Madeleine Morrissette, Rachel Corsetti, Josh L. Espinoza, Chris L. Dupont, Michael T. Laub, Kim Lewis

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Competition between skin antimicrobial peptides and commensal bacteria in type 2 inflammation enables survival of S. aureus by Teruaki Nakatsuji, Samantha L. Brinton, Kellen J. Cavagnero, Alan M. O’Neill, Yang Chen, Tatsuya Dokoshi, Anna M. Butcher, Olive C. Osuoji, Faiza Shafiq, Josh L. Espinoza, Christopher L. Dupont, Tissa R. Hata, Richard L. Gallo

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Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm by Jennifer M. Michaud, Luke R. Thompson, Drishti Kaul, Josh L. Espinoza, R. Alexander Richter, Zhenjiang Zech Xu, Christopher Lee, Kevin M. Pham, Charlotte M. Beall, Francesca Malfatti, Farooq Azam, Rob Knight, Michael D. Burkart, Christopher L. Dupont, Kimberly A. Prather

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Interactions between fecal gut microbiome, enteric pathogens, and energy regulating hormones among acutely malnourished rural Gambian children by Helen M. Nabwera, Josh L. Espinoza, Archibald Worwui, Modupeh Betts, Catherine Okoi, Abdul K. Sesay, Rowan Bancroft, Schadrac C. Agbla, Sheikh Jarju, Richard S. Bradbury, Mariama Colley, Amadou T. Jallow, Jie Liu, Eric R Houpt, Andrew M. Prentice, Martin Antonio, Robin M Bernstein, Christopher L. Dupont, Brenda A. Kwambana-Adams

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